Zm00001e014566_P002

Description : E3 ubiquitin ligase (PUB)

Gene families : OG0000227 (Archaeplastida) Phylogenetic Tree(s): OG0000227_tree ,
OG_05_0004745 (LandPlants) Phylogenetic Tree(s): OG_05_0004745_tree ,
OG_06_0003008 (SeedPlants) Phylogenetic Tree(s): OG_06_0003008_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e014566_P002
Cluster	HCCA: Cluster_256

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00217990	evm_27.TU.AmTr_v1...	U-box domain-containing protein 16 OS=Arabidopsis thaliana	0.03	Archaeplastida
AMTR_s00025p00052670	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
AMTR_s00072p00171260	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.05	Archaeplastida
AT1G29340	ATPUB17, PUB17	plant U-box 17	0.05	Archaeplastida
AT1G71020	No alias	ARM repeat superfamily protein	0.03	Archaeplastida
AT5G42340	PUB15	Plant U-Box 15	0.02	Archaeplastida
GSVIVT01007275001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01021265001	No alias	U-box domain-containing protein 17 OS=Arabidopsis thaliana	0.06	Archaeplastida
GSVIVT01024985001	No alias	U-box domain-containing protein 13 OS=Arabidopsis thaliana	0.03	Archaeplastida
Gb_08792	No alias	U-box domain-containing protein 1 OS=Medicago truncatula...	0.03	Archaeplastida
Gb_10627	No alias	U-box domain-containing protein 13 OS=Arabidopsis...	0.03	Archaeplastida
Gb_10871	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
Gb_13754	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
Gb_20805	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Gb_24091	No alias	U-box domain-containing protein 14 OS=Arabidopsis...	0.05	Archaeplastida
Gb_29129	No alias	U-box domain-containing protein 1 OS=Medicago truncatula...	0.05	Archaeplastida
Gb_29276	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
LOC_Os02g13960.1	No alias	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.03	Archaeplastida
LOC_Os02g28720.1	No alias	E3 ubiquitin ligase (PUB)	0.02	Archaeplastida
LOC_Os05g39930.1	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	Archaeplastida
MA_84321g0010	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
MA_96812g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
Pp3c13_16440V3.1	No alias	plant U-box 13	0.03	Archaeplastida
Pp3c9_17047V3.1	No alias	plant U-box 13	0.04	Archaeplastida
Solyc02g072080.1.1	No alias	U-box domain-containing protein 17 OS=Arabidopsis...	0.02	Archaeplastida
Solyc04g007640.3.1	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Solyc04g082440.4.1	No alias	U-box domain-containing protein 15 OS=Arabidopsis...	0.03	Archaeplastida
Solyc06g076040.3.1	No alias	E3 ubiquitin ligase (PUB)	0.04	Archaeplastida
Solyc09g018230.1.1	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	Archaeplastida
Solyc09g056450.4.1	No alias	U-box domain-containing protein 9 OS=Arabidopsis...	0.08	Archaeplastida
Zm00001e019429_P001	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e028839_P001	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e031915_P001	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0008107	galactoside 2-alpha-L-fucosyltransferase activity	IEP	Neighborhood
MF	GO:0008417	fucosyltransferase activity	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0031127	alpha-(1,2)-fucosyltransferase activity	IEP	Neighborhood
BP	GO:0042546	cell wall biogenesis	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	287	324
IPR003613	Ubox_domain	73	143

External Links

No external refs found!

Zm00001e014566_P002

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation