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  5. Zm00001e015034_P001

Zm00001e015034_P001


Description : Pentatricopeptide repeat-containing protein At3g04130, mitochondrial OS=Arabidopsis thaliana (sp|q9m8w9|pp211_arath : 402.0)


Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0005041 (SeedPlants) Phylogenetic Tree(s): OG_06_0005041_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e015034_P001
Cluster HCCA: Cluster_276

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00129420 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AT1G77360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT5G15010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01007280001 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.03 Archaeplastida
GSVIVT01014289001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_06907 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.02 Archaeplastida
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.03 Archaeplastida
Gb_21594 No alias Pentatricopeptide repeat-containing protein At1g71060,... 0.02 Archaeplastida
Gb_22860 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 Archaeplastida
Gb_31784 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.04 Archaeplastida
LOC_Os02g48122.1 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.02 Archaeplastida
MA_6218g0010 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
MA_929381g0010 No alias OTP43 mitochondrial RNA splicing factor 0.02 Archaeplastida
MA_953698g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Solyc09g082390.3.1 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0007346 regulation of mitotic cell cycle IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0010564 regulation of cell cycle process IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0032465 regulation of cytokinesis IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0032954 regulation of cytokinetic process IEP Neighborhood
BP GO:0032955 regulation of division septum assembly IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044087 regulation of cellular component biogenesis IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051301 cell division IEP Neighborhood
BP GO:0051302 regulation of cell division IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901891 regulation of cell septum assembly IEP Neighborhood
BP GO:1902412 regulation of mitotic cytokinesis IEP Neighborhood
BP GO:1903436 regulation of mitotic cytokinetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 122 150
IPR002885 Pentatricopeptide_repeat 246 300
IPR002885 Pentatricopeptide_repeat 322 351
IPR002885 Pentatricopeptide_repeat 430 462
IPR002885 Pentatricopeptide_repeat 187 234
IPR002885 Pentatricopeptide_repeat 362 406
No external refs found!