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  5. Zm00001e015190_P001

Zm00001e015190_P001


Description : Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidopsis thaliana (sp|q9zu67|pp162_arath : 211.0)


Gene families : OG0004280 (Archaeplastida) Phylogenetic Tree(s): OG0004280_tree ,
OG_05_0002954 (LandPlants) Phylogenetic Tree(s): OG_05_0002954_tree ,
OG_06_0000415 (SeedPlants) Phylogenetic Tree(s): OG_06_0000415_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e015190_P001
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00104950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.03 Archaeplastida
AMTR_s00029p00105510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g36680,... 0.03 Archaeplastida
AT1G61870 PPR336 pentatricopeptide repeat 336 0.05 Archaeplastida
AT2G18520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.09 Archaeplastida
GSVIVT01018992001 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.03 Archaeplastida
LOC_Os01g58080.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.14 Archaeplastida
LOC_Os02g42210.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.13 Archaeplastida
Solyc02g062910.3.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.06 Archaeplastida
Solyc02g085650.4.1 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.03 Archaeplastida
Solyc10g005280.1.1 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006177 GMP biosynthetic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0009163 nucleoside biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
BP GO:0042451 purine nucleoside biosynthetic process IEP Neighborhood
BP GO:0042455 ribonucleoside biosynthetic process IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046037 GMP metabolic process IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
BP GO:1901659 glycosyl compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 218 256
IPR002885 Pentatricopeptide_repeat 284 332
IPR002885 Pentatricopeptide_repeat 183 212
IPR002885 Pentatricopeptide_repeat 261 282
No external refs found!