Zm00001e015260_P001

Description : transcription factor (GATA)

Gene families : OG0000094 (Archaeplastida) Phylogenetic Tree(s): OG0000094_tree ,
OG_05_0013078 (LandPlants) Phylogenetic Tree(s): OG_05_0013078_tree ,
OG_06_0020783 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e015260_P001
Cluster	HCCA: Cluster_29

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00074220	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
AMTR_s00011p00253850	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.07	Archaeplastida
AMTR_s00039p00112210	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
AMTR_s00057p00121410	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
AMTR_s00064p00107710	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
AT2G18380	GATA20	GATA transcription factor 20	0.03	Archaeplastida
AT2G45050	GATA2	GATA transcription factor 2	0.04	Archaeplastida
AT3G24050	GATA1	GATA transcription factor 1	0.03	Archaeplastida
AT3G50870	HAN, MNP, GATA18	GATA type zinc finger transcription factor family protein	0.04	Archaeplastida
AT4G16141	No alias	GATA type zinc finger transcription factor family protein	0.04	Archaeplastida
AT5G26930	GATA23	GATA transcription factor 23	0.04	Archaeplastida
AT5G49300	GATA16	GATA transcription factor 16	0.03	Archaeplastida
AT5G66320	GATA5	GATA transcription factor 5	0.02	Archaeplastida
GSVIVT01016265001	No alias	GATA transcription factor 8 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01017011001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
GSVIVT01018180001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
GSVIVT01033385001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.03	Archaeplastida
GSVIVT01035614001	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.04	Archaeplastida
Gb_13387	No alias	transcription factor (GATA)	0.02	Archaeplastida
Gb_25568	No alias	transcription factor (GATA)	0.02	Archaeplastida
LOC_Os01g24070.1	No alias	transcription factor (GATA)	0.01	Archaeplastida
LOC_Os01g47360.1	No alias	transcription factor (GATA)	0.05	Archaeplastida
LOC_Os02g43150.1	No alias	transcription factor (GATA)	0.08	Archaeplastida
LOC_Os02g56250.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
LOC_Os04g45650.2	No alias	transcription factor (GATA)	0.12	Archaeplastida
LOC_Os05g44400.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
LOC_Os05g49280.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
LOC_Os05g50270.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
LOC_Os06g37450.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
LOC_Os09g08150.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os10g32070.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
LOC_Os10g40810.1	No alias	transcription factor (GATA)	0.06	Archaeplastida
LOC_Os12g07120.1	No alias	transcription factor (GATA)	0.05	Archaeplastida
MA_103421g0030	No alias	transcription factor (GATA)	0.03	Archaeplastida
MA_10436047g0010	No alias	transcription factor (GATA)	0.03	Archaeplastida
MA_120821g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_18616g0010	No alias	transcription factor (GATA)	0.02	Archaeplastida
Pp3c20_22630V3.1	No alias	GATA transcription factor 9	0.01	Archaeplastida
Pp3c21_15110V3.1	No alias	GATA transcription factor 19	0.01	Archaeplastida
Pp3c22_11040V3.1	No alias	GATA transcription factor 19	0.02	Archaeplastida
Solyc01g090760.4.1	No alias	transcription factor (GATA)	0.01	Archaeplastida
Solyc02g062760.4.1	No alias	transcription factor (GATA)	0.04	Archaeplastida
Solyc02g085190.2.1	No alias	transcription factor (GATA)	0.08	Archaeplastida
Solyc03g033660.4.1	No alias	transcription factor (GATA)	0.07	Archaeplastida
Solyc04g015360.3.1	No alias	transcription factor (GATA)	0.04	Archaeplastida
Solyc05g053500.4.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
Solyc05g056120.3.1	No alias	transcription factor (GATA)	0.04	Archaeplastida
Solyc08g066510.3.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
Zm00001e007391_P002	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e018438_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e026601_P001	No alias	transcription factor (GATA)	0.04	Archaeplastida
Zm00001e032219_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e032513_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e038971_P001	No alias	transcription factor (GATA)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0004175	endopeptidase activity	IEP	Neighborhood
MF	GO:0004252	serine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005875	microtubule associated complex	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
MF	GO:0008236	serine-type peptidase activity	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0017171	serine hydrolase activity	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
CC	GO:0030286	dynein complex	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0044238	primary metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
BP	GO:0071704	organic substance metabolic process	IEP	Neighborhood
MF	GO:0071949	FAD binding	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	305	339

External Links

No external refs found!

Zm00001e015260_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation