AT3G20420 (ATRTL2, RTL2)

Aliases : ATRTL2, RTL2

Description : RNAse THREE-like protein 2

Gene families : OG0000221 (Archaeplastida) Phylogenetic Tree(s): OG0000221_tree ,
OG_05_0001704 (LandPlants) Phylogenetic Tree(s): OG_05_0001704_tree ,
OG_06_0001136 (SeedPlants) Phylogenetic Tree(s): OG_06_0001136_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AT3G20420
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00252500 evm_27.TU.AmTr_v1... Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding ISS Interproscan
MF GO:0004525 ribonuclease III activity IMP Interproscan
MF GO:0004525 ribonuclease III activity ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005737 cytoplasm IDA Interproscan
BP GO:0010267 production of ta-siRNAs involved in RNA interference RCA Interproscan
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Interproscan
BP GO:0051607 defense response to virus RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0007031 peroxisome organization IEP Neighborhood
CC GO:0009527 plastid outer membrane IEP Neighborhood
CC GO:0009707 chloroplast outer membrane IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0015562 efflux transmembrane transporter activity IEP Neighborhood
BP GO:0032365 intracellular lipid transport IEP Neighborhood
BP GO:0034196 acylglycerol transport IEP Neighborhood
MF GO:0070300 phosphatidic acid binding IEP Neighborhood
BP GO:1901965 endoplasmic reticulum to chloroplast transport IEP Neighborhood
BP GO:1990052 ER to chloroplast lipid transport IEP Neighborhood
InterPro domains Description Start Stop
IPR000999 RNase_III_dom 93 201
IPR014720 dsRBD_dom 232 292
IPR014720 dsRBD_dom 314 385
No external refs found!