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AT3G20430


Description : CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).


Gene families : OG0007257 (Archaeplastida) Phylogenetic Tree(s): OG0007257_tree ,
OG_05_0006839 (LandPlants) Phylogenetic Tree(s): OG_05_0006839_tree ,
OG_06_0006582 (SeedPlants) Phylogenetic Tree(s): OG_06_0006582_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G20430
Cluster HCCA: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00184370 evm_27.TU.AmTr_v1... No description available 0.03 Archaeplastida
LOC_Os01g37842.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e027739_P001 No alias no hits & (original description: none) 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000412 histone peptidyl-prolyl isomerization IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0005527 macrolide binding IEP Neighborhood
MF GO:0005528 FK506 binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005777 peroxisome IEP Neighborhood
CC GO:0005778 peroxisomal membrane IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Neighborhood
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006626 protein targeting to mitochondrion IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0007005 mitochondrion organization IEP Neighborhood
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP Neighborhood
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
BP GO:0009870 defense response signaling pathway, resistance gene-dependent IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
CC GO:0031301 integral component of organelle membrane IEP Neighborhood
CC GO:0031306 intrinsic component of mitochondrial outer membrane IEP Neighborhood
CC GO:0031307 integral component of mitochondrial outer membrane IEP Neighborhood
CC GO:0031903 microbody membrane IEP Neighborhood
CC GO:0032592 integral component of mitochondrial membrane IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
CC GO:0044438 microbody part IEP Neighborhood
CC GO:0044439 peroxisomal part IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0070585 protein localization to mitochondrion IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072655 establishment of protein localization to mitochondrion IEP Neighborhood
CC GO:0098573 intrinsic component of mitochondrial membrane IEP Neighborhood
InterPro domains Description Start Stop
IPR019385 PHAX_RNA-binding_domain 94 174
No external refs found!