- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : transcription factor (RAV/NGATHA)
Gene families : OG0000363 (Archaeplastida) Phylogenetic Tree(s): OG0000363_tree ,
OG_05_0000191 (LandPlants) Phylogenetic Tree(s): OG_05_0000191_tree ,
OG_06_0013135 (SeedPlants) Phylogenetic Tree(s): OG_06_0013135_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e015451_P001 | |
| Cluster | HCCA: Cluster_22 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G36080 | No alias | AP2/B3-like transcriptional factor family protein | 0.04 | Archaeplastida | |
| GSVIVT01033902001 | No alias | RNA biosynthesis.transcriptional activation.B3... | 0.03 | Archaeplastida | |
| LOC_Os12g06080.1 | No alias | transcription factor (RAV/NGATHA) | 0.04 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003885 | D-arabinono-1,4-lactone oxidase activity | IEP | Neighborhood |
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | Neighborhood |
| MF | GO:0004568 | chitinase activity | IEP | Neighborhood |
| BP | GO:0006022 | aminoglycan metabolic process | IEP | Neighborhood |
| BP | GO:0006026 | aminoglycan catabolic process | IEP | Neighborhood |
| BP | GO:0006030 | chitin metabolic process | IEP | Neighborhood |
| BP | GO:0006032 | chitin catabolic process | IEP | Neighborhood |
| BP | GO:0006040 | amino sugar metabolic process | IEP | Neighborhood |
| BP | GO:0009056 | catabolic process | IEP | Neighborhood |
| BP | GO:0009057 | macromolecule catabolic process | IEP | Neighborhood |
| MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | Neighborhood |
| MF | GO:0016899 | oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor | IEP | Neighborhood |
| BP | GO:0016998 | cell wall macromolecule catabolic process | IEP | Neighborhood |
| BP | GO:0017144 | drug metabolic process | IEP | Neighborhood |
| BP | GO:0042737 | drug catabolic process | IEP | Neighborhood |
| BP | GO:0044036 | cell wall macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0044248 | cellular catabolic process | IEP | Neighborhood |
| BP | GO:0046348 | amino sugar catabolic process | IEP | Neighborhood |
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Neighborhood |
| MF | GO:0050662 | coenzyme binding | IEP | Neighborhood |
| BP | GO:1901071 | glucosamine-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:1901072 | glucosamine-containing compound catabolic process | IEP | Neighborhood |
| BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | Neighborhood |
| BP | GO:1901136 | carbohydrate derivative catabolic process | IEP | Neighborhood |
| BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Neighborhood |
| BP | GO:1901575 | organic substance catabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003340 | B3_DNA-bd | 101 | 201 |
| No external refs found! |