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  5. Zm00001e015685_P001

Zm00001e015685_P001


Description : Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial OS=Arabidopsis thaliana (sp|q9fng8|pp366_arath : 687.0)


Gene families : OG0010955 (Archaeplastida) Phylogenetic Tree(s): OG0010955_tree ,
OG_05_0010898 (LandPlants) Phylogenetic Tree(s): OG_05_0010898_tree ,
OG_06_0010824 (SeedPlants) Phylogenetic Tree(s): OG_06_0010824_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e015685_P001
Cluster HCCA: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
LOC_Os12g27060.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_904788g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Solyc01g006850.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 458 487
IPR002885 Pentatricopeptide_repeat 975 1004
IPR002885 Pentatricopeptide_repeat 905 934
IPR002885 Pentatricopeptide_repeat 320 346
IPR002885 Pentatricopeptide_repeat 493 521
IPR002885 Pentatricopeptide_repeat 284 311
IPR002885 Pentatricopeptide_repeat 391 416
IPR002885 Pentatricopeptide_repeat 939 969
IPR002885 Pentatricopeptide_repeat 428 450
IPR002885 Pentatricopeptide_repeat 1006 1055
IPR002885 Pentatricopeptide_repeat 795 839
IPR002885 Pentatricopeptide_repeat 524 573
No external refs found!