AT1G13630


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0011533 (Archaeplastida) Phylogenetic Tree(s): OG0011533_tree ,
OG_05_0011433 (LandPlants) Phylogenetic Tree(s): OG_05_0011433_tree ,
OG_06_0011536 (SeedPlants) Phylogenetic Tree(s): OG_06_0011536_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G13630
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00148p00070910 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01010112001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
LOC_Os10g33874.1 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
MA_137810g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
CC GO:0005635 nuclear envelope IEP Neighborhood
BP GO:0006264 mitochondrial DNA replication IEP Neighborhood
CC GO:0009295 nucleoid IEP Neighborhood
CC GO:0009574 preprophase band IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0032042 mitochondrial DNA metabolic process IEP Neighborhood
BP GO:0033258 plastid DNA metabolic process IEP Neighborhood
BP GO:0033259 plastid DNA replication IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0048768 root hair cell tip growth IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 435 463
IPR002885 Pentatricopeptide_repeat 189 210
IPR002885 Pentatricopeptide_repeat 366 410
IPR002885 Pentatricopeptide_repeat 306 338
IPR002885 Pentatricopeptide_repeat 691 737
IPR002885 Pentatricopeptide_repeat 618 666
IPR002885 Pentatricopeptide_repeat 536 585
IPR002885 Pentatricopeptide_repeat 467 515
IPR002885 Pentatricopeptide_repeat 220 268
No external refs found!