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  5. Zm00001e016242_P002

Zm00001e016242_P002


Description : Pumilio homolog 4 OS=Arabidopsis thaliana (sp|q9ss47|pum4_arath : 733.0)


Gene families : OG0000536 (Archaeplastida) Phylogenetic Tree(s): OG0000536_tree ,
OG_05_0000342 (LandPlants) Phylogenetic Tree(s): OG_05_0000342_tree ,
OG_06_0000990 (SeedPlants) Phylogenetic Tree(s): OG_06_0000990_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e016242_P002
Cluster HCCA: Cluster_314

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00251030 evm_27.TU.AmTr_v1... Pumilio homolog 2 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00025p00181800 evm_27.TU.AmTr_v1... Pumilio homolog 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT3G10360 APUM4, PUM4 pumilio 4 0.04 Archaeplastida
AT3G20250 PUM5, APUM5 pumilio 5 0.04 Archaeplastida
Cre17.g746647 No alias Pumilio homolog 3 OS=Arabidopsis thaliana 0.01 Archaeplastida
Gb_23280 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_39566 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os02g57390.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.09 Archaeplastida
MA_10159883g0010 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Smo86145 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Zm00001e021916_P002 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006665 sphingolipid metabolic process IEP Neighborhood
BP GO:0006672 ceramide metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0045927 positive regulation of growth IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR012940 NABP 305 665
IPR001313 Pumilio_RNA-bd_rpt 852 882
IPR001313 Pumilio_RNA-bd_rpt 934 960
IPR001313 Pumilio_RNA-bd_rpt 668 701
IPR001313 Pumilio_RNA-bd_rpt 740 771
IPR001313 Pumilio_RNA-bd_rpt 886 917
IPR001313 Pumilio_RNA-bd_rpt 703 736
IPR001313 Pumilio_RNA-bd_rpt 776 809
IPR001313 Pumilio_RNA-bd_rpt 812 839
No external refs found!