Zm00001e016398_P001

Description : ubiquitin E3 ligase (CERBERUS/LIN)

Gene families : OG0001418 (Archaeplastida) Phylogenetic Tree(s): OG0001418_tree ,
OG_05_0001365 (LandPlants) Phylogenetic Tree(s): OG_05_0001365_tree ,
OG_06_0003337 (SeedPlants) Phylogenetic Tree(s): OG_06_0003337_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e016398_P001
Cluster	HCCA: Cluster_535

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00231470	evm_27.TU.AmTr_v1...	Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus japonicus	0.02	Archaeplastida
Gb_32193	No alias	Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus...	0.02	Archaeplastida
LOC_Os02g07190.1	No alias	Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus...	0.03	Archaeplastida
MA_1171557g0010	No alias	ubiquitin E3 ligase (CERBERUS/LIN)	0.05	Archaeplastida
MA_15009g0010	No alias	Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus...	0.05	Archaeplastida
MA_7193588g0010	No alias	No annotation	0.04	Archaeplastida
MA_7506947g0010	No alias	Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus...	0.02	Archaeplastida
Solyc01g006380.2.1	No alias	Putative E3 ubiquitin-protein ligase LIN OS=Medicago...	0.04	Archaeplastida
Solyc07g020870.3.1	No alias	ubiquitin E3 ligase (CERBERUS/LIN)	0.05	Archaeplastida
Zm00001e013722_P001	No alias	Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
BP	GO:0045048	protein insertion into ER membrane	IEP	Neighborhood
BP	GO:0051205	protein insertion into membrane	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0072657	protein localization to membrane	IEP	Neighborhood
BP	GO:0090150	establishment of protein localization to membrane	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	230	301
IPR001680	WD40_repeat	928	957

External Links

No external refs found!