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  5. Zm00001e016559_P001

Zm00001e016559_P001


Description : C2H2 zinc finger transcription factor


Gene families : OG0000200 (Archaeplastida) Phylogenetic Tree(s): OG0000200_tree ,
OG_05_0000106 (LandPlants) Phylogenetic Tree(s): OG_05_0000106_tree ,
OG_06_0000058 (SeedPlants) Phylogenetic Tree(s): OG_06_0000058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e016559_P001
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00204520 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
AMTR_s00059p00106830 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.06 Archaeplastida
AT1G03840 MGP C2H2 and C2HC zinc fingers superfamily protein 0.03 Archaeplastida
AT2G02080 IDD4, AtIDD4 indeterminate(ID)-domain 4 0.03 Archaeplastida
AT3G45260 No alias C2H2-like zinc finger protein 0.03 Archaeplastida
AT5G44160 NUC C2H2-like zinc finger protein 0.05 Archaeplastida
GSVIVT01003119001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
GSVIVT01010283001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
GSVIVT01016867001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
GSVIVT01020612001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.06 Archaeplastida
GSVIVT01025166001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
GSVIVT01025658001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
GSVIVT01035391001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
Gb_03909 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os01g09850.1 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
LOC_Os01g14010.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os01g70870.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os02g45054.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os03g10140.1 No alias C2H2 zinc finger transcription factor. elicitor peptide... 0.04 Archaeplastida
LOC_Os03g13400.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os07g39310.1 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
LOC_Os08g44050.1 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
LOC_Os09g27650.2 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Mp1g15660.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Pp3c1_16920V3.1 No alias C2H2-like zinc finger protein 0.04 Archaeplastida
Pp3c1_20230V3.1 No alias indeterminate(ID)-domain 2 0.03 Archaeplastida
Pp3c2_20240V3.1 No alias indeterminate(ID)-domain 2 0.02 Archaeplastida
Pp3c2_22070V3.1 No alias C2H2-like zinc finger protein 0.02 Archaeplastida
Pp3c5_20980V3.1 No alias C2H2-like zinc finger protein 0.03 Archaeplastida
Solyc09g065670.3.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Solyc11g069240.2.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e004751_P001 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Zm00001e026143_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e034898_P001 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Neighborhood
MF GO:0005102 signaling receptor binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008083 growth factor activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0030545 receptor regulator activity IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
MF GO:0048018 receptor ligand activity IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!