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Description : R-loop reader protein (ALBA1/2)
Gene families : OG0000764 (Archaeplastida) Phylogenetic Tree(s): OG0000764_tree ,
OG_05_0001543 (LandPlants) Phylogenetic Tree(s): OG_05_0001543_tree ,
OG_06_0002063 (SeedPlants) Phylogenetic Tree(s): OG_06_0002063_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Zm00001e016750_P002 | |
| Cluster | HCCA: Cluster_346 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000383.54 | No alias | Uncharacterized protein At2g34160 OS=Arabidopsis thaliana | 0.01 | Archaeplastida | |
| LOC_Os02g10810.1 | No alias | R-loop reader protein (ALBA1/2) | 0.07 | Archaeplastida | |
| LOC_Os06g40040.1 | No alias | R-loop reader protein (ALBA1/2) | 0.05 | Archaeplastida | |
| MA_748541g0010 | No alias | R-loop reader protein (ALBA1/2) | 0.03 | Archaeplastida | |
| Mp6g20280.1 | No alias | R-loop reader protein (ALBA1/2) | 0.03 | Archaeplastida | |
| Pp3c12_20750V3.1 | No alias | Alba DNA/RNA-binding protein | 0.04 | Archaeplastida | |
| Smo86023 | No alias | Uncharacterized protein At2g34160 OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
| Solyc06g066100.3.1 | No alias | R-loop reader protein (ALBA1/2) | 0.04 | Archaeplastida | |
| Zm00001e024990_P001 | No alias | R-loop reader protein (ALBA1/2) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000228 | nuclear chromosome | IEP | Neighborhood |
| MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | Neighborhood |
| MF | GO:0004843 | thiol-dependent ubiquitin-specific protease activity | IEP | Neighborhood |
| CC | GO:0005694 | chromosome | IEP | Neighborhood |
| CC | GO:0005739 | mitochondrion | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
| BP | GO:0006338 | chromatin remodeling | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006399 | tRNA metabolic process | IEP | Neighborhood |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0008033 | tRNA processing | IEP | Neighborhood |
| MF | GO:0008170 | N-methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008175 | tRNA methyltransferase activity | IEP | Neighborhood |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | Neighborhood |
| BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Neighborhood |
| BP | GO:0009057 | macromolecule catabolic process | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Neighborhood |
| MF | GO:0019783 | ubiquitin-like protein-specific protease activity | IEP | Neighborhood |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | Neighborhood |
| BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
| CC | GO:0035145 | exon-exon junction complex | IEP | Neighborhood |
| MF | GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | Neighborhood |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | Neighborhood |
| CC | GO:0044422 | organelle part | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044428 | nuclear part | IEP | Neighborhood |
| CC | GO:0044446 | intracellular organelle part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0051603 | proteolysis involved in cellular protein catabolic process | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0101005 | ubiquitinyl hydrolase activity | IEP | Neighborhood |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002775 | DNA/RNA-bd_Alba-like | 36 | 95 |
| No external refs found! |