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  5. Zm00001e016882_P001

Zm00001e016882_P001


Description : histone (H2B)


Gene families : OG0000186 (Archaeplastida) Phylogenetic Tree(s): OG0000186_tree ,
OG_05_0000249 (LandPlants) Phylogenetic Tree(s): OG_05_0000249_tree ,
OG_06_0000187 (SeedPlants) Phylogenetic Tree(s): OG_06_0000187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e016882_P001
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00085300 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.1 Archaeplastida
AMTR_s00012p00085960 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.09 Archaeplastida
AMTR_s00012p00088340 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.1 Archaeplastida
AT1G07790 HTB1 Histone superfamily protein 0.04 Archaeplastida
AT3G45980 HTB9, H2B Histone superfamily protein 0.04 Archaeplastida
AT3G46030 HTB11 Histone superfamily protein 0.17 Archaeplastida
AT5G22880 HTB2, H2B histone B2 0.04 Archaeplastida
AT5G59910 HTB4 Histone superfamily protein 0.05 Archaeplastida
Cre06.g264800 No alias Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
Cre06.g264900 No alias Chromatin organisation.histones.H2B-type histone 0.14 Archaeplastida
Cre06.g265400 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
Cre06.g266750 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Cre06.g268100 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
Cre06.g268250 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Cre06.g271376 No alias Chromatin organisation.histones.H2B-type histone 0.17 Archaeplastida
Cre06.g273850 No alias Chromatin organisation.histones.H2B-type histone 0.07 Archaeplastida
Cre06.g274250 No alias Chromatin organisation.histones.H2B-type histone 0.13 Archaeplastida
Cre06.g274750 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
Cre06.g275800 No alias Chromatin organisation.histones.H2B-type histone 0.08 Archaeplastida
Cre06.g276550 No alias Chromatin organisation.histones.H2B-type histone 0.16 Archaeplastida
Cre06.g276900 No alias Chromatin organisation.histones.H2B-type histone 0.06 Archaeplastida
Cre12.g504550 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Cre12.g504700 No alias Chromatin organisation.histones.H2B-type histone 0.14 Archaeplastida
Cre12.g505600 No alias Chromatin organisation.histones.H2B-type histone 0.06 Archaeplastida
Cre12.g506200 No alias Chromatin organisation.histones.H2B-type histone 0.15 Archaeplastida
Cre13.g570050 No alias Chromatin organisation.histones.H2B-type histone 0.17 Archaeplastida
Cre17.g709150 No alias Chromatin organisation.histones.H2B-type histone 0.15 Archaeplastida
Cre17.g710450 No alias Chromatin organisation.histones.H2B-type histone 0.16 Archaeplastida
Cre17.g711750 No alias Chromatin organisation.histones.H2B-type histone 0.14 Archaeplastida
Cre17.g713450 No alias Chromatin organisation.histones.H2B-type histone 0.12 Archaeplastida
Cre17.g714050 No alias Chromatin organisation.histones.H2B-type histone 0.14 Archaeplastida
GSVIVT01016164001 No alias Chromatin organisation.histones.H2B-type histone 0.15 Archaeplastida
GSVIVT01025021001 No alias Chromatin organisation.histones.H2B-type histone 0.08 Archaeplastida
GSVIVT01025023001 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
GSVIVT01025025001 No alias Chromatin organisation.histones.H2B-type histone 0.1 Archaeplastida
Gb_02245 No alias histone (H2B) 0.13 Archaeplastida
Gb_12082 No alias histone (H2B) 0.06 Archaeplastida
Gb_12096 No alias histone (H2B) 0.04 Archaeplastida
Gb_25549 No alias histone (H2B) 0.05 Archaeplastida
Gb_26315 No alias histone (H2B) 0.1 Archaeplastida
Gb_32754 No alias histone (H2B) 0.08 Archaeplastida
Gb_41617 No alias histone (H2B) 0.04 Archaeplastida
LOC_Os01g05610.1 No alias histone (H2B) 0.06 Archaeplastida
LOC_Os01g05630.1 No alias histone (H2B) 0.05 Archaeplastida
LOC_Os01g05900.1 No alias histone (H2B) 0.09 Archaeplastida
LOC_Os01g05970.1 No alias histone (H2B) 0.05 Archaeplastida
LOC_Os01g06010.1 No alias histone (H2B) 0.08 Archaeplastida
LOC_Os01g62230.1 No alias histone (H2B) 0.06 Archaeplastida
LOC_Os03g17084.1 No alias histone (H2B) 0.18 Archaeplastida
LOC_Os05g49860.1 No alias histone (H2B) 0.18 Archaeplastida
LOC_Os08g38300.1 No alias histone (H2B) 0.11 Archaeplastida
MA_10151143g0010 No alias histone (H2B) 0.04 Archaeplastida
MA_10428006g0010 No alias histone (H2B) 0.07 Archaeplastida
MA_10435143g0010 No alias histone (H2B) 0.15 Archaeplastida
MA_10435143g0020 No alias histone (H2B) 0.05 Archaeplastida
MA_10436516g0010 No alias histone (H2B) 0.04 Archaeplastida
MA_10436516g0020 No alias histone (H2B) 0.05 Archaeplastida
MA_138612g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_38565g0010 No alias histone (H2B) 0.05 Archaeplastida
MA_454575g0010 No alias histone (H2B) 0.04 Archaeplastida
MA_6078786g0010 No alias histone (H2B) 0.05 Archaeplastida
MA_77198g0010 No alias histone (H2B) 0.04 Archaeplastida
MA_8065g0010 No alias histone (H2B) 0.08 Archaeplastida
MA_9293473g0010 No alias histone (H2B) 0.08 Archaeplastida
Mp4g13450.1 No alias histone (H2B) 0.04 Archaeplastida
Mp6g04070.1 No alias histone (H2B) 0.09 Archaeplastida
Mp6g07010.1 No alias histone (H2B) 0.03 Archaeplastida
Pp3c12_7610V3.1 No alias Histone superfamily protein 0.17 Archaeplastida
Pp3c13_23540V3.1 No alias Histone superfamily protein 0.04 Archaeplastida
Pp3c14_21050V3.1 No alias Histone superfamily protein 0.07 Archaeplastida
Pp3c17_15780V3.1 No alias Histone superfamily protein 0.04 Archaeplastida
Pp3c17_15800V3.1 No alias Histone superfamily protein 0.02 Archaeplastida
Pp3c4_20250V3.1 No alias Histone superfamily protein 0.06 Archaeplastida
Pp3c6_27740V3.1 No alias Histone superfamily protein 0.05 Archaeplastida
Smo182308 No alias Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
Solyc02g038690.1.1 No alias histone (H2B) 0.13 Archaeplastida
Solyc03g071620.2.1 No alias histone (H2B) 0.09 Archaeplastida
Solyc05g055440.1.1 No alias histone (H2B) 0.11 Archaeplastida
Solyc06g074780.1.1 No alias histone (H2B) 0.11 Archaeplastida
Solyc06g074790.2.1 No alias histone (H2B) 0.14 Archaeplastida
Solyc06g075800.1.1 No alias histone (H2B) 0.07 Archaeplastida
Solyc11g007920.1.1 No alias histone (H2B) 0.12 Archaeplastida
Solyc11g007930.1.1 No alias histone (H2B) 0.14 Archaeplastida
Solyc11g066430.2.1 No alias histone (H2B) 0.14 Archaeplastida
Solyc12g011455.1.1 No alias histone (H2B) 0.04 Archaeplastida
Solyc12g013510.1.1 No alias histone (H2B) 0.08 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007088 regulation of mitotic nuclear division IEP Neighborhood
BP GO:0007346 regulation of mitotic cell cycle IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0010564 regulation of cell cycle process IEP Neighborhood
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
BP GO:0033045 regulation of sister chromatid segregation IEP Neighborhood
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Neighborhood
CC GO:0035145 exon-exon junction complex IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0051783 regulation of nuclear division IEP Neighborhood
BP GO:0051983 regulation of chromosome segregation IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
BP GO:0090231 regulation of spindle checkpoint IEP Neighborhood
BP GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint IEP Neighborhood
BP GO:1901976 regulation of cell cycle checkpoint IEP Neighborhood
BP GO:1901987 regulation of cell cycle phase transition IEP Neighborhood
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Neighborhood
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
BP GO:1903504 regulation of mitotic spindle checkpoint IEP Neighborhood
BP GO:1905818 regulation of chromosome separation IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 13 98
No external refs found!