1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e018178_P001

Zm00001e018178_P001


Description : component RPL8 of LSU proteome component


Gene families : OG0001917 (Archaeplastida) Phylogenetic Tree(s): OG0001917_tree ,
OG_05_0001773 (LandPlants) Phylogenetic Tree(s): OG_05_0001773_tree ,
OG_06_0001930 (SeedPlants) Phylogenetic Tree(s): OG_06_0001930_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e018178_P001
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00109050 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 Archaeplastida
AT2G18020 EMB2296 Ribosomal protein L2 family 0.19 Archaeplastida
AT4G36130 No alias Ribosomal protein L2 family 0.16 Archaeplastida
Cpa|evm.model.tig00020965.22 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 Archaeplastida
Cre12.g535851 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 Archaeplastida
GSVIVT01014552001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
LOC_Os12g38000.1 No alias component RPL8 of LSU proteome component 0.18 Archaeplastida
MA_10431163g0010 No alias component RPL8 of LSU proteome component 0.03 Archaeplastida
MA_219740g0010 No alias component RPL8 of LSU proteome component 0.05 Archaeplastida
Mp7g01860.1 No alias component RPL8 of LSU proteome component 0.18 Archaeplastida
Mp7g08730.1 No alias component RPL8 of LSU proteome component 0.15 Archaeplastida
Pp3c12_10200V3.1 No alias Ribosomal protein L2 family 0.15 Archaeplastida
Pp3c13_21760V3.1 No alias Ribosomal protein L2 family 0.17 Archaeplastida
Pp3c13_23630V3.1 No alias Ribosomal protein L2 family 0.16 Archaeplastida
Pp3c4_12690V3.1 No alias Ribosomal protein L2 family 0.12 Archaeplastida
Pp3c4_12720V3.1 No alias Ribosomal protein L2 family 0.12 Archaeplastida
Smo170971 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
Solyc07g063890.2.1 No alias component RPL8 of LSU proteome component 0.12 Archaeplastida
Solyc12g005330.2.1 No alias component RPL8 of LSU proteome component 0.18 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005743 mitochondrial inner membrane IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019866 organelle inner membrane IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
CC GO:0061617 MICOS complex IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR022666 Rbsml_prot_L2_RNA-bd_dom 13 90
IPR022669 Ribosomal_L2_C 98 230
No external refs found!