AT3G22980


Description : Ribosomal protein S5/Elongation factor G/III/V family protein


Gene families : OG0005668 (Archaeplastida) Phylogenetic Tree(s): OG0005668_tree ,
OG_05_0006564 (LandPlants) Phylogenetic Tree(s): OG_05_0006564_tree ,
OG_06_0008852 (SeedPlants) Phylogenetic Tree(s): OG_06_0008852_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G22980
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Gb_39134 No alias Efl1 LSU processome elongation-factor-like regulatory GTPase 0.03 Archaeplastida
Pp3c17_21830V3.1 No alias Ribosomal protein S5/Elongation factor G/III/V family protein 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
MF GO:0008135 translation factor activity, RNA binding ISS Interproscan
Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000266 mitochondrial fission IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
BP GO:0002684 positive regulation of immune system process IEP Neighborhood
BP GO:0002790 peptide secretion IEP Neighborhood
BP GO:0002831 regulation of response to biotic stimulus IEP Neighborhood
BP GO:0002833 positive regulation of response to biotic stimulus IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004742 dihydrolipoyllysine-residue acetyltransferase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005388 calcium-transporting ATPase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005635 nuclear envelope IEP Neighborhood
CC GO:0005768 endosome IEP Neighborhood
CC GO:0005802 trans-Golgi network IEP Neighborhood
CC GO:0005874 microtubule IEP Neighborhood
CC GO:0005876 spindle microtubule IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006006 glucose metabolic process IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006487 protein N-linked glycosylation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006862 nucleotide transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0007005 mitochondrion organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
CC GO:0008287 protein serine/threonine phosphatase complex IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0008511 sodium:potassium:chloride symporter activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009306 protein secretion IEP Neighborhood
BP GO:0009409 response to cold IEP Neighborhood
BP GO:0009631 cold acclimation IEP Neighborhood
MF GO:0009674 potassium:sodium symporter activity IEP Neighborhood
BP GO:0009743 response to carbohydrate IEP Neighborhood
BP GO:0009744 response to sucrose IEP Neighborhood
BP GO:0009746 response to hexose IEP Neighborhood
BP GO:0009749 response to glucose IEP Neighborhood
BP GO:0009750 response to fructose IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009900 dehiscence IEP Neighborhood
BP GO:0009901 anther dehiscence IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010053 root epidermal cell differentiation IEP Neighborhood
BP GO:0010104 regulation of ethylene-activated signaling pathway IEP Neighborhood
BP GO:0010112 regulation of systemic acquired resistance IEP Neighborhood
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP Neighborhood
BP GO:0010359 regulation of anion channel activity IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015081 sodium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015085 calcium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015108 chloride transmembrane transporter activity IEP Neighborhood
MF GO:0015296 anion:cation symporter activity IEP Neighborhood
MF GO:0015370 solute:sodium symporter activity IEP Neighborhood
MF GO:0015373 anion:sodium symporter activity IEP Neighborhood
MF GO:0015377 cation:chloride symporter activity IEP Neighborhood
MF GO:0015378 sodium:chloride symporter activity IEP Neighborhood
MF GO:0015379 potassium:chloride symporter activity IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0015662 ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism IEP Neighborhood
BP GO:0015696 ammonium transport IEP Neighborhood
BP GO:0015748 organophosphate ester transport IEP Neighborhood
BP GO:0015802 basic amino acid transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016197 endosomal transport IEP Neighborhood
MF GO:0016417 S-acyltransferase activity IEP Neighborhood
MF GO:0016418 S-acetyltransferase activity IEP Neighborhood
BP GO:0016482 cytosolic transport IEP Neighborhood
BP GO:0016485 protein processing IEP Neighborhood
BP GO:0016559 peroxisome fission IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019829 cation-transporting ATPase activity IEP Neighborhood
BP GO:0021700 developmental maturation IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0022898 regulation of transmembrane transporter activity IEP Neighborhood
BP GO:0030036 actin cytoskeleton organization IEP Neighborhood
MF GO:0030523 dihydrolipoamide S-acyltransferase activity IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0031349 positive regulation of defense response IEP Neighborhood
CC GO:0031410 cytoplasmic vesicle IEP Neighborhood
CC GO:0031982 vesicle IEP Neighborhood
BP GO:0032101 regulation of response to external stimulus IEP Neighborhood
BP GO:0032103 positive regulation of response to external stimulus IEP Neighborhood
BP GO:0032409 regulation of transporter activity IEP Neighborhood
BP GO:0032412 regulation of ion transmembrane transporter activity IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032879 regulation of localization IEP Neighborhood
BP GO:0032922 circadian regulation of gene expression IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034284 response to monosaccharide IEP Neighborhood
BP GO:0034285 response to disaccharide IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042147 retrograde transport, endosome to Golgi IEP Neighborhood
BP GO:0042325 regulation of phosphorylation IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043269 regulation of ion transport IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0043902 positive regulation of multi-organism process IEP Neighborhood
BP GO:0044070 regulation of anion transport IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
BP GO:0044375 regulation of peroxisome size IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
BP GO:0045089 positive regulation of innate immune response IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048468 cell development IEP Neighborhood
BP GO:0048469 cell maturation IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048586 regulation of long-day photoperiodism, flowering IEP Neighborhood
BP GO:0048609 multicellular organismal reproductive process IEP Neighborhood
BP GO:0048764 trichoblast maturation IEP Neighborhood
BP GO:0048765 root hair cell differentiation IEP Neighborhood
BP GO:0050778 positive regulation of immune response IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
MF GO:0051011 microtubule minus-end binding IEP Neighborhood
BP GO:0051049 regulation of transport IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051604 protein maturation IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0070297 regulation of phosphorelay signal transduction system IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071695 anatomical structure maturation IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0080147 root hair cell development IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
BP GO:0090627 plant epidermal cell differentiation IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0097708 intracellular vesicle IEP Neighborhood
CC GO:0098791 Golgi subcompartment IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1901672 positive regulation of systemic acquired resistance IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
CC GO:1903293 phosphatase complex IEP Neighborhood
BP GO:1903959 regulation of anion transmembrane transport IEP Neighborhood
BP GO:2000022 regulation of jasmonic acid mediated signaling pathway IEP Neighborhood
BP GO:2000028 regulation of photoperiodism, flowering IEP Neighborhood
InterPro domains Description Start Stop
IPR000640 EFG_V-like 874 958
IPR004161 EFTu-like_2 441 519
IPR000795 TF_GTP-bd_dom 8 312
No external refs found!