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  5. Zm00001e018993_P001

Zm00001e018993_P001


Description : transcription factor (MADS/AGL)


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e018993_P001
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00266470 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
AMTR_s00021p00254030 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00047p00181740 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00047p00190220 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AMTR_s00071p00198520 evm_27.TU.AmTr_v1... Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT2G26320 AGL33 AGAMOUS-like 33 0.02 Archaeplastida
AT3G57230 AGL16 AGAMOUS-like 16 0.03 Archaeplastida
AT4G11880 AGL14 AGAMOUS-like 14 0.02 Archaeplastida
AT4G37940 AGL21 AGAMOUS-like 21 0.03 Archaeplastida
AT5G51870 AGL71 AGAMOUS-like 71 0.03 Archaeplastida
GSVIVT01003864001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.1 Archaeplastida
GSVIVT01006592001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01010221001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.07 Archaeplastida
GSVIVT01012249001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01014093001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
Gb_03068 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Gb_28587 No alias transcription factor (MADS/AGL) 0.07 Archaeplastida
Gb_39109 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os01g66290.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os02g07430.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
LOC_Os04g52410.2 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os05g11414.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os06g01890.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
LOC_Os09g02780.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
LOC_Os09g32948.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_138440g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_175522g0010 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_69370g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_78010g0010 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Pp3c17_5920V3.1 No alias K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Smo79393 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.07 Archaeplastida
Solyc05g056620.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc06g064840.4.1 No alias no description available(sp|f6i457|ag11c_vitvi : 172.0) 0.02 Archaeplastida
Solyc11g028020.3.1 No alias No annotation 0.03 Archaeplastida
Zm00001e021861_P001 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 15 60
No external refs found!