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  5. Zm00001e019167_P001

Zm00001e019167_P001


Description : component LSm3 of U6-associated LSm accessory ribonucleoprotein complex


Gene families : OG0007001 (Archaeplastida) Phylogenetic Tree(s): OG0007001_tree ,
OG_05_0007735 (LandPlants) Phylogenetic Tree(s): OG_05_0007735_tree ,
OG_06_0008806 (SeedPlants) Phylogenetic Tree(s): OG_06_0008806_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e019167_P001
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00090360 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U6-associated LSm accessory... 0.05 Archaeplastida
AT1G76860 No alias Small nuclear ribonucleoprotein family protein 0.03 Archaeplastida
Cpa|evm.model.tig00020927.50 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 Archaeplastida
Cre16.g662300 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.07 Archaeplastida
LOC_Os01g64690.1 No alias component LSm3 of U6-associated LSm accessory... 0.06 Archaeplastida
Pp3c24_12260V3.1 No alias Small nuclear ribonucleoprotein family protein 0.03 Archaeplastida
Smo107803 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 Archaeplastida
Solyc11g005370.2.1 No alias component LSm3 of U6-associated LSm accessory... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006487 protein N-linked glycosylation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
CC GO:0034998 oligosaccharyltransferase I complex IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 71 147
No external refs found!