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  5. Zm00001e019266_P002

Zm00001e019266_P002


Description : PAP6/FLN1 cofactor of plastid-encoded RNA polymerase


Gene families : OG0000505 (Archaeplastida) Phylogenetic Tree(s): OG0000505_tree ,
OG_05_0006095 (LandPlants) Phylogenetic Tree(s): OG_05_0006095_tree ,
OG_06_0009885 (SeedPlants) Phylogenetic Tree(s): OG_06_0009885_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e019266_P002
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00193780 evm_27.TU.AmTr_v1... Fructokinase-like 1, chloroplastic OS=Arabidopsis thaliana 0.06 Archaeplastida
AT3G54090 FLN1 fructokinase-like 1 0.14 Archaeplastida
Gb_05959 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.1 Archaeplastida
Gb_07834 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.09 Archaeplastida
Gb_13440 No alias Fructokinase-like 1, chloroplastic OS=Arabidopsis... 0.09 Archaeplastida
Gb_38659 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.03 Archaeplastida
LOC_Os06g12600.1 No alias fructose kinase 0.04 Archaeplastida
MA_10430836g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_659042g0010 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.05 Archaeplastida
Mp7g17740.1 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.06 Archaeplastida
Pp3c13_6840V3.1 No alias fructokinase-like 1 0.1 Archaeplastida
Solyc02g091490.4.1 No alias fructose kinase 0.03 Archaeplastida
Solyc09g011850.4.1 No alias PAP6/FLN1 cofactor of plastid-encoded RNA polymerase 0.15 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006788 heme oxidation IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042168 heme metabolic process IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR011611 PfkB_dom 180 493
No external refs found!