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  5. Zm00001e019387_P001

Zm00001e019387_P001


Description : Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana (sp|q9fld8|pp408_arath : 556.0)


Gene families : OG0008311 (Archaeplastida) Phylogenetic Tree(s): OG0008311_tree ,
OG_05_0007188 (LandPlants) Phylogenetic Tree(s): OG_05_0007188_tree ,
OG_06_0007441 (SeedPlants) Phylogenetic Tree(s): OG_06_0007441_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e019387_P001
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AT5G39980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
GSVIVT01032591001 No alias Pentatricopeptide repeat-containing protein At5g39980,... 0.07 Archaeplastida
LOC_Os01g61630.1 No alias Pentatricopeptide repeat-containing protein At5g39980,... 0.09 Archaeplastida
Smo73828 No alias Pentatricopeptide repeat-containing protein At5g39980,... 0.02 Archaeplastida
Solyc02g087560.1.1 No alias Pentatricopeptide repeat-containing protein At5g39980,... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
CC GO:0098533 ATPase dependent transmembrane transport complex IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
CC GO:1902495 transmembrane transporter complex IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
CC GO:1904949 ATPase complex IEP Neighborhood
CC GO:1990351 transporter complex IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 145 188
IPR002885 Pentatricopeptide_repeat 396 440
IPR002885 Pentatricopeptide_repeat 317 363
IPR002885 Pentatricopeptide_repeat 203 257
IPR002885 Pentatricopeptide_repeat 285 310
IPR002885 Pentatricopeptide_repeat 576 600
IPR002885 Pentatricopeptide_repeat 469 495
IPR002885 Pentatricopeptide_repeat 539 564
No external refs found!