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  5. Zm00001e019415_P003

Zm00001e019415_P003


Description : Protein RETICULATA-RELATED 6, chloroplastic OS=Arabidopsis thaliana (sp|q8rwg3|rer6_arath : 845.0)


Gene families : OG0005576 (Archaeplastida) Phylogenetic Tree(s): OG0005576_tree ,
OG_05_0004310 (LandPlants) Phylogenetic Tree(s): OG_05_0004310_tree ,
OG_06_0004818 (SeedPlants) Phylogenetic Tree(s): OG_06_0004818_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e019415_P003
Cluster HCCA: Cluster_208

Target Alias Description ECC score Gene Family Method Actions
AT2G40400 No alias Protein of unknown function (DUF399 and DUF3411) 0.09 Archaeplastida
LOC_Os01g61120.1 No alias Protein RETICULATA-RELATED 6, chloroplastic... 0.08 Archaeplastida
LOC_Os05g39680.1 No alias component SNX2 of Retromer protein recycling complex 0.02 Archaeplastida
MA_10429062g0010 No alias Protein RETICULATA-RELATED 5, chloroplastic... 0.02 Archaeplastida
Mp6g12840.1 No alias Protein RETICULATA-RELATED 6, chloroplastic... 0.02 Archaeplastida
Pp3c3_35080V3.1 No alias Protein of unknown function (DUF399 and DUF3411) 0.02 Archaeplastida
Pp3c8_1750V3.1 No alias Protein of unknown function (DUF399 and DUF3411) 0.05 Archaeplastida
Smo177305 No alias Protein RETICULATA-RELATED 5, chloroplastic... 0.03 Archaeplastida
Solyc06g050620.3.1 No alias Protein RETICULATA-RELATED 6, chloroplastic... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0003951 NAD+ kinase activity IEP Neighborhood
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Neighborhood
MF GO:0005381 iron ion transmembrane transporter activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005849 mRNA cleavage factor complex IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006378 mRNA polyadenylation IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006739 NADP metabolic process IEP Neighborhood
BP GO:0006741 NADP biosynthetic process IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006817 phosphate ion transport IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006826 iron ion transport IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
BP GO:0008272 sulfate transport IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Neighborhood
MF GO:0015116 sulfate transmembrane transporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0015698 inorganic anion transport IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0034755 iron ion transmembrane transport IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0072348 sulfur compound transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007314 Cofac_haem-bd_dom 139 359
IPR021825 RETICULATA-related 466 649
No external refs found!