1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT3G23960

AT3G23960


Description : F-box and associated interaction domains-containing protein


Gene families : OG0000466 (Archaeplastida) Phylogenetic Tree(s): OG0000466_tree ,
OG_05_0000239 (LandPlants) Phylogenetic Tree(s): OG_05_0000239_tree ,
OG_06_0000111 (SeedPlants) Phylogenetic Tree(s): OG_06_0000111_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G23960
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AT1G19160 No alias F-box family protein 0.01 Archaeplastida
AT1G30925 No alias phospholipase Cs 0.04 Archaeplastida
AT1G31163 No alias F-box associated ubiquitination effector family protein 0.03 Archaeplastida
AT1G31620 No alias unknown protein; Has 9 Blast hits to 9 proteins in 2... 0.05 Archaeplastida
AT1G32660 No alias F-box and associated interaction domains-containing protein 0.03 Archaeplastida
AT1G33010 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT1G46840 No alias F-box family protein 0.03 Archaeplastida
AT1G52495 No alias No description available 0.01 Archaeplastida
AT1G60370 No alias F-box and associated interaction domains-containing protein 0.03 Archaeplastida
AT2G21930 No alias F-box associated ubiquitination effector family protein 0.04 Archaeplastida
AT2G32470 No alias F-box associated ubiquitination effector family protein 0.05 Archaeplastida
AT3G04660 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT3G47150 No alias F-box and associated interaction domains-containing protein 0.01 Archaeplastida
AT3G49440 No alias F-box associated ubiquitination effector family protein 0.01 Archaeplastida
AT3G52330 No alias F-box associated ubiquitination effector family protein 0.03 Archaeplastida
AT4G19930 No alias F-box and associated interaction domains-containing protein 0.03 Archaeplastida
AT4G38870 No alias F-box and associated interaction domains-containing protein 0.06 Archaeplastida
AT5G15660 No alias F-box and associated interaction domains-containing protein 0.01 Archaeplastida
AT5G15670 No alias F-box family protein 0.01 Archaeplastida
AT5G18160 No alias F-box and associated interaction domains-containing protein 0.05 Archaeplastida
AT5G42430 No alias F-box and associated interaction domains-containing protein 0.04 Archaeplastida
AT5G44345 No alias F-box associated ubiquitination effector family protein 0.05 Archaeplastida
AT5G62060 No alias F-box and associated interaction domains-containing protein 0.01 Archaeplastida
AT5G62660 No alias F-box and associated interaction domains-containing protein 0.03 Archaeplastida
AT5G65850 No alias F-box and associated interaction domains-containing protein 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000002 mitochondrial genome maintenance IEP Neighborhood
BP GO:0000018 regulation of DNA recombination IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004592 pantoate-beta-alanine ligase activity IEP Neighborhood
MF GO:0004640 phosphoribosylanthranilate isomerase activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
CC GO:0005834 heterotrimeric G-protein complex IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006261 DNA-dependent DNA replication IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0006370 7-methylguanosine mRNA capping IEP Neighborhood
CC GO:0008076 voltage-gated potassium channel complex IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
BP GO:0009875 pollen-pistil interaction IEP Neighborhood
BP GO:0010212 response to ionizing radiation IEP Neighborhood
BP GO:0010492 maintenance of shoot apical meristem identity IEP Neighborhood
BP GO:0015939 pantothenate metabolic process IEP Neighborhood
BP GO:0015940 pantothenate biosynthetic process IEP Neighborhood
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Neighborhood
BP GO:0019478 D-amino acid catabolic process IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0032877 positive regulation of DNA endoreduplication IEP Neighborhood
CC GO:0034702 ion channel complex IEP Neighborhood
CC GO:0034703 cation channel complex IEP Neighborhood
CC GO:0034705 potassium channel complex IEP Neighborhood
MF GO:0035197 siRNA binding IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
BP GO:0043687 post-translational protein modification IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
BP GO:0045740 positive regulation of DNA replication IEP Neighborhood
BP GO:0045910 negative regulation of DNA recombination IEP Neighborhood
BP GO:0046416 D-amino acid metabolic process IEP Neighborhood
BP GO:0048451 petal formation IEP Neighborhood
BP GO:0048453 sepal formation IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051053 negative regulation of DNA metabolic process IEP Neighborhood
BP GO:0051054 positive regulation of DNA metabolic process IEP Neighborhood
MF GO:0061980 regulatory RNA binding IEP Neighborhood
BP GO:0090068 positive regulation of cell cycle process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1902495 transmembrane transporter complex IEP Neighborhood
CC GO:1905360 GTPase complex IEP Neighborhood
CC GO:1990351 transporter complex IEP Neighborhood
BP GO:2000105 positive regulation of DNA-dependent DNA replication IEP Neighborhood
InterPro domains Description Start Stop
IPR001810 F-box_dom 31 59
IPR013187 F-box-assoc_dom_typ3 236 359
No external refs found!