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  5. Zm00001e019653_P002

Zm00001e019653_P002


Description : TRAF1 endomembrane trafficking ATG6-stability regulator protein


Gene families : OG0001944 (Archaeplastida) Phylogenetic Tree(s): OG0001944_tree ,
OG_05_0021315 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0020568 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e019653_P002
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g56800.1 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.06 Archaeplastida
LOC_Os05g43280.1 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.1 Archaeplastida
MA_10434493g0010 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.04 Archaeplastida
Mp8g14880.1 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.03 Archaeplastida
Pp3c12_900V3.1 No alias TRAF-like superfamily protein 0.05 Archaeplastida
Pp3c17_710V3.1 No alias TRAF-like superfamily protein 0.02 Archaeplastida
Solyc03g005430.4.1 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.02 Archaeplastida
Solyc09g089560.4.1 No alias TRAF1 endomembrane trafficking ATG6-stability regulator protein 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002083 MATH/TRAF_dom 72 189
No external refs found!