AT3G24140 (FMA)

Aliases : FMA

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000509 (Archaeplastida) Phylogenetic Tree(s): OG0000509_tree ,
OG_05_0000283 (LandPlants) Phylogenetic Tree(s): OG_05_0000283_tree ,
OG_06_0009573 (SeedPlants) Phylogenetic Tree(s): OG_06_0009573_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G24140
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AT1G22490	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	Archaeplastida
Gb_17233	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os06g33450.2	No alias	transcription factor (bHLH)	0.02	Archaeplastida
LOC_Os10g23050.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
MA_686524g0010	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Pp3c22_14220V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Solyc03g007410.4.1	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Solyc09g091760.3.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Solyc11g010340.2.1	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Solyc12g087850.3.1	No alias	transcription factor (bHLH)	0.01	Archaeplastida
Zm00001e009989_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e023271_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e026643_P001	No alias	transcription factor (bHLH)	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	RCA	Interproscan
BP	GO:0002682	regulation of immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	RCA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006468	protein phosphorylation	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006612	protein targeting to membrane	RCA	Interproscan
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	RCA	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009862	systemic acquired resistance, salicylic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009863	salicylic acid mediated signaling pathway	None	Extended
BP	GO:0009867	jasmonic acid mediated signaling pathway	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009965	leaf morphogenesis	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010052	guard cell differentiation	IMP	Interproscan
BP	GO:0010103	stomatal complex morphogenesis	RCA	Interproscan
BP	GO:0010310	regulation of hydrogen peroxide metabolic process	RCA	Interproscan
BP	GO:0010363	regulation of plant-type hypersensitive response	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019220	regulation of phosphate metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0023014	signal transduction by protein phosphorylation	None	Extended
BP	GO:0030154	cell differentiation	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031347	regulation of defense response	None	Extended
BP	GO:0031348	negative regulation of defense response	RCA	Interproscan
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0032268	regulation of cellular protein metabolic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0034613	cellular protein localization	None	Extended
BP	GO:0035303	regulation of dephosphorylation	None	Extended
BP	GO:0035304	regulation of protein dephosphorylation	RCA	Interproscan
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042886	amide transport	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045088	regulation of innate immune response	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0045595	regulation of cell differentiation	None	Extended
BP	GO:0045597	positive regulation of cell differentiation	IMP	Interproscan
BP	GO:0045893	positive regulation of transcription, DNA-templated	IDA	Interproscan
BP	GO:0045893	positive regulation of transcription, DNA-templated	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051174	regulation of phosphorus metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051193	regulation of cofactor metabolic process	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051302	regulation of cell division	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051782	negative regulation of cell division	IMP	Interproscan
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072657	protein localization to membrane	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090150	establishment of protein localization to membrane	None	Extended
BP	GO:0090626	plant epidermis morphogenesis	None	Extended
BP	GO:0090627	plant epidermal cell differentiation	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000377	regulation of reactive oxygen species metabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000103	sulfate assimilation	IEP	Neighborhood
BP	GO:0000160	phosphorelay signal transduction system	IEP	Neighborhood
MF	GO:0000257	nitrilase activity	IEP	Neighborhood
BP	GO:0000302	response to reactive oxygen species	IEP	Neighborhood
BP	GO:0001101	response to acid chemical	IEP	Neighborhood
MF	GO:0001664	G-protein coupled receptor binding	IEP	Neighborhood
BP	GO:0002252	immune effector process	IEP	Neighborhood
BP	GO:0002376	immune system process	IEP	Neighborhood
BP	GO:0002679	respiratory burst involved in defense response	IEP	Neighborhood
MF	GO:0003933	GTP cyclohydrolase activity	IEP	Neighborhood
MF	GO:0003935	GTP cyclohydrolase II activity	IEP	Neighborhood
MF	GO:0004604	phosphoadenylyl-sulfate reductase (thioredoxin) activity	IEP	Neighborhood
MF	GO:0005275	amine transmembrane transporter activity	IEP	Neighborhood
CC	GO:0005652	nuclear lamina	IEP	Neighborhood
CC	GO:0005788	endoplasmic reticulum lumen	IEP	Neighborhood
CC	GO:0005834	heterotrimeric G-protein complex	IEP	Neighborhood
CC	GO:0005851	eukaryotic translation initiation factor 2B complex	IEP	Neighborhood
BP	GO:0006446	regulation of translational initiation	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
BP	GO:0006641	triglyceride metabolic process	IEP	Neighborhood
BP	GO:0006771	riboflavin metabolic process	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006865	amino acid transport	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006952	defense response	IEP	Neighborhood
BP	GO:0006970	response to osmotic stress	IEP	Neighborhood
BP	GO:0006972	hyperosmotic response	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
BP	GO:0007186	G-protein coupled receptor signaling pathway	IEP	Neighborhood
BP	GO:0007187	G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger	IEP	Neighborhood
BP	GO:0007188	adenylate cyclase-modulating G-protein coupled receptor signaling pathway	IEP	Neighborhood
MF	GO:0008422	beta-glucosidase activity	IEP	Neighborhood
MF	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity	IEP	Neighborhood
BP	GO:0009231	riboflavin biosynthetic process	IEP	Neighborhood
BP	GO:0009266	response to temperature stimulus	IEP	Neighborhood
BP	GO:0009408	response to heat	IEP	Neighborhood
BP	GO:0009414	response to water deprivation	IEP	Neighborhood
BP	GO:0009415	response to water	IEP	Neighborhood
BP	GO:0009611	response to wounding	IEP	Neighborhood
BP	GO:0009628	response to abiotic stimulus	IEP	Neighborhood
BP	GO:0009636	response to toxic substance	IEP	Neighborhood
BP	GO:0009642	response to light intensity	IEP	Neighborhood
BP	GO:0009644	response to high light intensity	IEP	Neighborhood
BP	GO:0009652	thigmotropism	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009723	response to ethylene	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0009733	response to auxin	IEP	Neighborhood
BP	GO:0009737	response to abscisic acid	IEP	Neighborhood
BP	GO:0009738	abscisic acid-activated signaling pathway	IEP	Neighborhood
BP	GO:0009753	response to jasmonic acid	IEP	Neighborhood
BP	GO:0009864	induced systemic resistance, jasmonic acid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009873	ethylene-activated signaling pathway	IEP	Neighborhood
MF	GO:0009931	calcium-dependent protein serine/threonine kinase activity	IEP	Neighborhood
BP	GO:0009970	cellular response to sulfate starvation	IEP	Neighborhood
MF	GO:0009973	adenylyl-sulfate reductase activity	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0010035	response to inorganic substance	IEP	Neighborhood
BP	GO:0010071	root meristem specification	IEP	Neighborhood
BP	GO:0010078	maintenance of root meristem identity	IEP	Neighborhood
BP	GO:0010119	regulation of stomatal movement	IEP	Neighborhood
MF	GO:0010178	IAA-amino acid conjugate hydrolase activity	IEP	Neighborhood
MF	GO:0010179	IAA-Ala conjugate hydrolase activity	IEP	Neighborhood
BP	GO:0010200	response to chitin	IEP	Neighborhood
BP	GO:0010243	response to organonitrogen compound	IEP	Neighborhood
BP	GO:0010286	heat acclimation	IEP	Neighborhood
BP	GO:0010492	maintenance of shoot apical meristem identity	IEP	Neighborhood
BP	GO:0010555	response to mannitol	IEP	Neighborhood
MF	GO:0010857	calcium-dependent protein kinase activity	IEP	Neighborhood
BP	GO:0010942	positive regulation of cell death	IEP	Neighborhood
BP	GO:0012502	induction of programmed cell death	IEP	Neighborhood
BP	GO:0015711	organic anion transport	IEP	Neighborhood
BP	GO:0015804	neutral amino acid transport	IEP	Neighborhood
BP	GO:0015824	proline transport	IEP	Neighborhood
BP	GO:0015849	organic acid transport	IEP	Neighborhood
BP	GO:0016032	viral process	IEP	Neighborhood
BP	GO:0016145	S-glycoside catabolic process	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	Neighborhood
MF	GO:0016815	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles	IEP	Neighborhood
MF	GO:0018822	nitrile hydratase activity	IEP	Neighborhood
MF	GO:0019137	thioglucosidase activity	IEP	Neighborhood
MF	GO:0019238	cyclohydrolase activity	IEP	Neighborhood
BP	GO:0019379	sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	IEP	Neighborhood
BP	GO:0019419	sulfate reduction	IEP	Neighborhood
BP	GO:0019432	triglyceride biosynthetic process	IEP	Neighborhood
BP	GO:0019499	cyanide metabolic process	IEP	Neighborhood
BP	GO:0019759	glycosinolate catabolic process	IEP	Neighborhood
BP	GO:0019762	glucosinolate catabolic process	IEP	Neighborhood
CC	GO:0019897	extrinsic component of plasma membrane	IEP	Neighborhood
CC	GO:0030863	cortical cytoskeleton	IEP	Neighborhood
CC	GO:0031234	extrinsic component of cytoplasmic side of plasma membrane	IEP	Neighborhood
MF	GO:0031683	G-protein beta/gamma-subunit complex binding	IEP	Neighborhood
BP	GO:0033993	response to lipid	IEP	Neighborhood
CC	GO:0034399	nuclear periphery	IEP	Neighborhood
BP	GO:0034605	cellular response to heat	IEP	Neighborhood
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
BP	GO:0042493	response to drug	IEP	Neighborhood
BP	GO:0042538	hyperosmotic salinity response	IEP	Neighborhood
BP	GO:0042542	response to hydrogen peroxide	IEP	Neighborhood
BP	GO:0042726	flavin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0042727	flavin-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0042762	regulation of sulfur metabolic process	IEP	Neighborhood
BP	GO:0043068	positive regulation of programmed cell death	IEP	Neighborhood
BP	GO:0044000	movement in host	IEP	Neighborhood
MF	GO:0044183	protein binding involved in protein folding	IEP	Neighborhood
BP	GO:0044403	symbiont process	IEP	Neighborhood
BP	GO:0044766	multi-organism transport	IEP	Neighborhood
BP	GO:0045730	respiratory burst	IEP	Neighborhood
BP	GO:0046460	neutral lipid biosynthetic process	IEP	Neighborhood
BP	GO:0046463	acylglycerol biosynthetic process	IEP	Neighborhood
BP	GO:0046677	response to antibiotic	IEP	Neighborhood
BP	GO:0046739	transport of virus in multicellular host	IEP	Neighborhood
BP	GO:0046740	transport of virus in host, cell to cell	IEP	Neighborhood
BP	GO:0046794	transport of virus	IEP	Neighborhood
BP	GO:0046942	carboxylic acid transport	IEP	Neighborhood
MF	GO:0047427	cyanoalanine nitrilase activity	IEP	Neighborhood
MF	GO:0047558	3-cyanoalanine hydratase activity	IEP	Neighborhood
BP	GO:0051026	chiasma assembly	IEP	Neighborhood
BP	GO:0051410	detoxification of nitrogen compound	IEP	Neighborhood
BP	GO:0051814	movement in other organism involved in symbiotic interaction	IEP	Neighborhood
BP	GO:0052126	movement in host environment	IEP	Neighborhood
BP	GO:0052192	movement in environment of other organism involved in symbiotic interaction	IEP	Neighborhood
BP	GO:0061077	chaperone-mediated protein folding	IEP	Neighborhood
MF	GO:0080061	indole-3-acetonitrile nitrilase activity	IEP	Neighborhood
BP	GO:0097305	response to alcohol	IEP	Neighborhood
BP	GO:0098542	defense response to other organism	IEP	Neighborhood
CC	GO:0098797	plasma membrane protein complex	IEP	Neighborhood
BP	GO:1901698	response to nitrogen compound	IEP	Neighborhood
BP	GO:1901700	response to oxygen-containing compound	IEP	Neighborhood
BP	GO:1902456	regulation of stomatal opening	IEP	Neighborhood
BP	GO:1902579	multi-organism localization	IEP	Neighborhood
BP	GO:1902586	multi-organism intercellular transport	IEP	Neighborhood
CC	GO:1905360	GTPase complex	IEP	Neighborhood
BP	GO:1905421	regulation of plant organ morphogenesis	IEP	Neighborhood
BP	GO:2000067	regulation of root morphogenesis	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	195	246

External Links

No external refs found!

AT3G24140 (FMA)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation