AT3G24340 (chr40)

Aliases : chr40

Description : chromatin remodeling 40

Gene families : OG0000450 (Archaeplastida) Phylogenetic Tree(s): OG0000450_tree ,
OG_05_0000597 (LandPlants) Phylogenetic Tree(s): OG_05_0000597_tree ,
OG_06_0000338 (SeedPlants) Phylogenetic Tree(s): OG_06_0000338_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AT3G24340
Cluster HCCA: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
AT3G42670 CLSY, CHR38 chromatin remodeling 38 0.03 Archaeplastida
GSVIVT01024512001 No alias Protein CHROMATIN REMODELING 35 OS=Arabidopsis thaliana 0.04 Archaeplastida
LOC_Os05g32610.1 No alias RDR2-polymerase regulator protein CLSY3/4 0.04 Archaeplastida
MA_109115g0010 No alias RDR2-polymerase regulator protein CLSY3/4 0.03 Archaeplastida
Solyc01g068320.3.1 No alias RDR2-polymerase regulator protein CLSY3/4 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0004386 helicase activity ISS Interproscan
MF GO:0005524 ATP binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0007267 cell-cell signaling RCA Interproscan
BP GO:0009616 virus induced gene silencing RCA Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0010267 production of ta-siRNAs involved in RNA interference RCA Interproscan
BP GO:0034968 histone lysine methylation RCA Interproscan
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Neighborhood
BP GO:0000076 DNA replication checkpoint IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0004743 pyruvate kinase activity IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0007050 cell cycle arrest IEP Neighborhood
MF GO:0016755 transferase activity, transferring amino-acyl groups IEP Neighborhood
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP Neighborhood
BP GO:0031570 DNA integrity checkpoint IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
BP GO:0046937 phytochelatin metabolic process IEP Neighborhood
BP GO:0046938 phytochelatin biosynthetic process IEP Neighborhood
BP GO:0060341 regulation of cellular localization IEP Neighborhood
BP GO:0080154 regulation of fertilization IEP Neighborhood
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP Neighborhood
BP GO:1903827 regulation of cellular protein localization IEP Neighborhood
BP GO:2000008 regulation of protein localization to cell surface IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 930 1046
IPR000330 SNF2_N 597 868
No external refs found!