Zm00001e020205_P004


Description : transcription factor (ARF)


Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000395 (LandPlants) Phylogenetic Tree(s): OG_05_0000395_tree ,
OG_06_0002431 (SeedPlants) Phylogenetic Tree(s): OG_06_0002431_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e020205_P004
Cluster HCCA: Cluster_234

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00221770 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.05 Archaeplastida
AMTR_s00155p00082980 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.05 Archaeplastida
AT1G59750 ARF1 auxin response factor 1 0.03 Archaeplastida
AT2G46530 ARF11 auxin response factor 11 0.05 Archaeplastida
GSVIVT01004942001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
GSVIVT01021553001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
GSVIVT01032251001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
Gb_23186 No alias transcription factor (ARF) 0.03 Archaeplastida
Gb_39685 No alias transcription factor (ARF) 0.04 Archaeplastida
Gb_39686 No alias transcription factor (ARF) 0.02 Archaeplastida
LOC_Os01g48060.1 No alias transcription factor (ARF) 0.06 Archaeplastida
LOC_Os01g70270.1 No alias transcription factor (ARF) 0.04 Archaeplastida
LOC_Os02g06910.1 No alias transcription factor (ARF) 0.05 Archaeplastida
LOC_Os02g35140.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os04g57610.1 No alias transcription factor (ARF) 0.06 Archaeplastida
LOC_Os05g43920.1 No alias transcription factor (ARF) 0.06 Archaeplastida
LOC_Os05g48870.1 No alias transcription factor (ARF) 0.05 Archaeplastida
LOC_Os06g46410.1 No alias transcription factor (ARF) 0.03 Archaeplastida
LOC_Os11g32110.1 No alias transcription factor (ARF) 0.09 Archaeplastida
LOC_Os12g41950.1 No alias transcription factor (ARF) 0.05 Archaeplastida
MA_103763g0010 No alias Auxin response factor 6 OS=Arabidopsis thaliana... 0.07 Archaeplastida
MA_10430707g0020 No alias transcription factor (ARF) 0.04 Archaeplastida
MA_137387g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp2g02890.1 No alias Auxin response factor 19 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Pp3c13_4720V3.1 No alias auxin response factor 6 0.04 Archaeplastida
Pp3c14_16990V3.1 No alias auxin response factor 6 0.03 Archaeplastida
Pp3c1_40270V3.1 No alias auxin response factor 6 0.03 Archaeplastida
Pp3c4_13010V3.1 No alias auxin response factor 16 0.03 Archaeplastida
Solyc01g103050.3.1 No alias transcription factor (ARF) 0.06 Archaeplastida
Solyc03g031970.4.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc05g047460.3.1 No alias transcription factor (ARF) 0.06 Archaeplastida
Solyc05g056040.3.1 No alias transcription factor (ARF) 0.06 Archaeplastida
Solyc06g075150.3.1 No alias transcription factor (ARF) 0.04 Archaeplastida
Solyc12g042070.3.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e013191_P001 No alias transcription factor (ARF) 0.05 Archaeplastida
Zm00001e023038_P001 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e025163_P001 No alias transcription factor (ARF) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 147 248
IPR010525 Auxin_resp 273 353
No external refs found!