Zm00001e020243_P001

Description : transcription factor (GATA)

Gene families : OG0000094 (Archaeplastida) Phylogenetic Tree(s): OG0000094_tree ,
OG_05_0000055 (LandPlants) Phylogenetic Tree(s): OG_05_0000055_tree ,
OG_06_0000264 (SeedPlants) Phylogenetic Tree(s): OG_06_0000264_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e020243_P001
Cluster	HCCA: Cluster_211

Target	Alias	Description	ECC score	Gene Family Method
AT2G18380	GATA20	GATA transcription factor 20	0.03	Archaeplastida
AT3G24050	GATA1	GATA transcription factor 1	0.03	Archaeplastida
AT3G50870	HAN, MNP, GATA18	GATA type zinc finger transcription factor family protein	0.02	Archaeplastida
AT4G16141	No alias	GATA type zinc finger transcription factor family protein	0.03	Archaeplastida
LOC_Os02g56250.1	No alias	transcription factor (GATA)	0.03	Archaeplastida
LOC_Os05g44400.1	No alias	transcription factor (GATA)	0.05	Archaeplastida
LOC_Os05g50270.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
LOC_Os09g08150.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os10g40810.1	No alias	transcription factor (GATA)	0.07	Archaeplastida
LOC_Os12g07120.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
Pp3c10_22600V3.1	No alias	GATA transcription factor 5	0.02	Archaeplastida
Pp3c3_25840V3.1	No alias	No annotation	0.03	Archaeplastida
Smo440037	No alias	RNA biosynthesis.transcriptional activation.C2C2...	0.02	Archaeplastida
Solyc02g062760.4.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
Solyc03g033660.4.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
Solyc09g075610.3.1	No alias	transcription factor (GATA)	0.02	Archaeplastida
Zm00001e002326_P001	No alias	transcription factor (GATA)	0.05	Archaeplastida
Zm00001e018438_P001	No alias	transcription factor (GATA)	0.03	Archaeplastida
Zm00001e039468_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e039469_P001	No alias	transcription factor (GATA)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005576	extracellular region	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
BP	GO:0009733	response to auxin	IEP	Neighborhood
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
CC	GO:0048046	apoplast	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	110	144

External Links

No external refs found!

Zm00001e020243_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation