Zm00001e020247_P001

Description : component psRPL12 of large ribosomal subunit proteome

Gene families : OG0005000 (Archaeplastida) Phylogenetic Tree(s): OG0005000_tree ,
OG_05_0004365 (LandPlants) Phylogenetic Tree(s): OG_05_0004365_tree ,
OG_06_0005437 (SeedPlants) Phylogenetic Tree(s): OG_06_0005437_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e020247_P001
Cluster	HCCA: Cluster_107

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00036p00109340	evm_27.TU.AmTr_v1...	Protein biosynthesis.organelle translation...	0.1	Archaeplastida
AT3G27830	RPL12-A, RPL12	ribosomal protein L12-A	0.05	Archaeplastida
AT3G27850	RPL12-C	ribosomal protein L12-C	0.13	Archaeplastida
Cre13.g581650	No alias	Protein biosynthesis.organelle translation...	0.09	Archaeplastida
GSVIVT01032454001	No alias	Protein biosynthesis.organelle translation...	0.06	Archaeplastida
Gb_05150	No alias	component psRPL12 of large ribosomal subunit proteome	0.03	Archaeplastida
LOC_Os01g47330.1	No alias	component psRPL12 of large ribosomal subunit proteome	0.09	Archaeplastida
LOC_Os05g49320.1	No alias	component psRPL12 of large ribosomal subunit proteome	0.16	Archaeplastida
Mp5g15720.1	No alias	component psRPL12 of large ribosomal subunit proteome	0.15	Archaeplastida
Pp3c16_2080V3.1	No alias	ribosomal protein L12-C	0.08	Archaeplastida
Pp3c25_1440V3.1	No alias	ribosomal protein L12-C	0.11	Archaeplastida
Pp3c26_10990V3.1	No alias	ribosomal protein L12-A	0.06	Archaeplastida
Pp3c4_24130V3.1	No alias	ribosomal protein L12-C	0.14	Archaeplastida
Pp3c5_2700V3.1	No alias	ribosomal protein L12-C	0.08	Archaeplastida
Solyc02g086730.3.1	No alias	component psRPL12 of large ribosomal subunit proteome	0.08	Archaeplastida
Solyc02g086740.1.1	No alias	component psRPL12 of large ribosomal subunit proteome	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Neighborhood
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
BP	GO:0006720	isoprenoid metabolic process	IEP	Neighborhood
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Neighborhood
MF	GO:0008171	O-methyltransferase activity	IEP	Neighborhood
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
MF	GO:0009055	electron transfer activity	IEP	Neighborhood
CC	GO:0009521	photosystem	IEP	Neighborhood
CC	GO:0009523	photosystem II	IEP	Neighborhood
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Neighborhood
BP	GO:0010207	photosystem II assembly	IEP	Neighborhood
BP	GO:0015979	photosynthesis	IEP	Neighborhood
BP	GO:0015994	chlorophyll metabolic process	IEP	Neighborhood
BP	GO:0015995	chlorophyll biosynthetic process	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	Neighborhood
MF	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	IEP	Neighborhood
MF	GO:0016853	isomerase activity	IEP	Neighborhood
MF	GO:0016859	cis-trans isomerase activity	IEP	Neighborhood
BP	GO:0018208	peptidyl-proline modification	IEP	Neighborhood
CC	GO:0019898	extrinsic component of membrane	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Neighborhood
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Neighborhood
MF	GO:0033743	peptide-methionine (R)-S-oxide reductase activity	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0042440	pigment metabolic process	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044436	thylakoid part	IEP	Neighborhood
BP	GO:0046148	pigment biosynthetic process	IEP	Neighborhood
MF	GO:0046406	magnesium protoporphyrin IX methyltransferase activity	IEP	Neighborhood
MF	GO:0051536	iron-sulfur cluster binding	IEP	Neighborhood
MF	GO:0051540	metal cluster binding	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1990204	oxidoreductase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR008932	Ribosomal_L7/L12_oligo	54	103
IPR013823	Ribosomal_L7/L12_C	116	182

External Links

No external refs found!

Zm00001e020247_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation