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  5. Zm00001e020506_P001

Zm00001e020506_P001


Description : SCD1 component of post-Golgi trafficking SCD complex


Gene families : OG0004026 (Archaeplastida) Phylogenetic Tree(s): OG0004026_tree ,
OG_05_0006017 (LandPlants) Phylogenetic Tree(s): OG_05_0006017_tree ,
OG_06_0006413 (SeedPlants) Phylogenetic Tree(s): OG_06_0006413_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e020506_P001
Cluster HCCA: Cluster_258

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00104p00054580 evm_27.TU.AmTr_v1... Vesicle trafficking.endomembrane trafficking.post-Golgi... 0.02 Archaeplastida
AT1G49040 SCD1 stomatal cytokinesis defective / SCD1 protein (SCD1) 0.03 Archaeplastida
Cre12.g511600 No alias No description available 0.01 Archaeplastida
GSVIVT01008260001 No alias Vesicle trafficking.endomembrane trafficking.post-Golgi... 0.03 Archaeplastida
Gb_36258 No alias SCD1 component of post-Golgi trafficking SCD complex 0.02 Archaeplastida
LOC_Os01g39380.1 No alias SCD1 component of post-Golgi trafficking SCD complex 0.06 Archaeplastida
Pp3c26_9700V3.1 No alias stomatal cytokinesis defective / SCD1 protein (SCD1) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Neighborhood
CC GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006487 protein N-linked glycosylation IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006906 vesicle fusion IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
CC GO:0008250 oligosaccharyltransferase complex IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016050 vesicle organization IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Neighborhood
MF GO:0019829 cation-transporting ATPase activity IEP Neighborhood
MF GO:0022853 active ion transmembrane transporter activity IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Neighborhood
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
MF GO:0036442 proton-exporting ATPase activity IEP Neighborhood
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Neighborhood
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Neighborhood
BP GO:0048284 organelle fusion IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0061025 membrane fusion IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0090174 organelle membrane fusion IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR005112 dDENN_dom 398 449
IPR001680 WD40_repeat 842 891
IPR001680 WD40_repeat 938 974
IPR001680 WD40_repeat 1061 1097
IPR001680 WD40_repeat 1022 1056
IPR001680 WD40_repeat 901 933
IPR005113 uDENN_dom 41 106
IPR001194 cDENN_dom 127 307
No external refs found!