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  5. Zm00001e020727_P006

Zm00001e020727_P006


Description : DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica (sp|q5jkf2|rh40_orysj : 701.0)


Gene families : OG0000695 (Archaeplastida) Phylogenetic Tree(s): OG0000695_tree ,
OG_05_0001582 (LandPlants) Phylogenetic Tree(s): OG_05_0001582_tree ,
OG_06_0001971 (SeedPlants) Phylogenetic Tree(s): OG_06_0001971_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e020727_P006
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00096p00079870 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G55150 No alias DEA(D/H)-box RNA helicase family protein 0.02 Archaeplastida
AT3G06480 No alias DEAD box RNA helicase family protein 0.05 Archaeplastida
GSVIVT01016847001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
GSVIVT01032442001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
Gb_10302 No alias DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.02 Archaeplastida
Gb_31459 No alias pre-mRNA splicing regulator (DDX5) 0.02 Archaeplastida
LOC_Os01g10050.2 No alias pre-mRNA splicing regulator (DDX5) 0.02 Archaeplastida
LOC_Os01g36860.1 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa... 0.07 Archaeplastida
LOC_Os01g68320.2 No alias pre-mRNA splicing regulator (DDX5) 0.04 Archaeplastida
LOC_Os11g46240.1 No alias DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.05 Archaeplastida
MA_19015g0010 No alias pre-mRNA splicing regulator (DDX5) 0.06 Archaeplastida
Mp3g07940.1 No alias pre-mRNA splicing regulator (DDX5) 0.03 Archaeplastida
Mp4g22900.1 No alias DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.02 Archaeplastida
Pp3c1_24700V3.1 No alias DEA(D/H)-box RNA helicase family protein 0.02 Archaeplastida
Solyc01g057760.4.1 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis... 0.06 Archaeplastida
Solyc03g112350.4.1 No alias pre-mRNA splicing regulator (DDX5) 0.06 Archaeplastida
Solyc12g044860.3.1 No alias DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004659 prenyltransferase activity IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008318 protein prenyltransferase activity IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
BP GO:0018342 protein prenylation IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
BP GO:0097354 prenylation IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 381 489
IPR011545 DEAD/DEAH_box_helicase_dom 174 343
IPR001202 WW_dom 22 52
No external refs found!