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  5. Zm00001e020869_P004

Zm00001e020869_P004


Description : C3H zinc finger transcription factor


Gene families : OG0000743 (Archaeplastida) Phylogenetic Tree(s): OG0000743_tree ,
OG_05_0000692 (LandPlants) Phylogenetic Tree(s): OG_05_0000692_tree ,
OG_06_0001988 (SeedPlants) Phylogenetic Tree(s): OG_06_0001988_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e020869_P004
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00021560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 Archaeplastida
AT3G21100 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
AT3G51950 No alias Zinc finger (CCCH-type) family protein / RNA recognition... 0.05 Archaeplastida
AT3G63450 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 Archaeplastida
AT5G12440 No alias CCCH-type zinc fingerfamily protein with RNA-binding domain 0.03 Archaeplastida
GSVIVT01001467001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.06 Archaeplastida
GSVIVT01031538001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.05 Archaeplastida
LOC_Os03g21140.1 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
LOC_Os03g21160.2 No alias C3H zinc finger transcription factor 0.08 Archaeplastida
LOC_Os07g48410.1 No alias C3H zinc finger transcription factor 0.08 Archaeplastida
MA_10426583g0010 No alias C3H zinc finger transcription factor 0.03 Archaeplastida
MA_33942g0010 No alias C3H zinc finger transcription factor 0.04 Archaeplastida
Solyc01g008600.4.1 No alias C3H zinc finger transcription factor 0.07 Archaeplastida
Solyc01g088100.4.1 No alias C3H zinc finger transcription factor 0.05 Archaeplastida
Solyc11g065320.2.1 No alias C3H zinc finger transcription factor 0.06 Archaeplastida
Zm00001e035876_P001 No alias C3H zinc finger transcription factor 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR032297 Torus 154 187
IPR000504 RRM_dom 294 337
No external refs found!