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  5. Zm00001e021425_P001

Zm00001e021425_P001


Description : transcription factor (SBP)


Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0000092 (LandPlants) Phylogenetic Tree(s): OG_05_0000092_tree ,
OG_06_0000075 (SeedPlants) Phylogenetic Tree(s): OG_06_0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e021425_P001
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00106p00144050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
AT1G69170 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Archaeplastida
AT3G60030 SPL12 squamosa promoter-binding protein-like 12 0.03 Archaeplastida
AT5G50570 SPL13, SPL13A Squamosa promoter-binding protein-like (SBP domain)... 0.04 Archaeplastida
AT5G50670 SPL13, SPL13B Squamosa promoter-binding protein-like (SBP domain)... 0.04 Archaeplastida
Cre10.g421550 No alias RNA biosynthesis.transcriptional activation.SBP... 0.01 Archaeplastida
Cre10.g433350 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
Cre17.g698233 No alias RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
GSVIVT01008556001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
GSVIVT01013452001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
GSVIVT01018205001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.04 Archaeplastida
GSVIVT01033519001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
Gb_00228 No alias transcription factor (SBP) 0.03 Archaeplastida
Gb_03921 No alias transcription factor (SBP) 0.03 Archaeplastida
Gb_22010 No alias transcription factor (SBP) 0.02 Archaeplastida
Gb_26599 No alias transcription factor (SBP) 0.03 Archaeplastida
Gb_37539 No alias transcription factor (SBP) 0.06 Archaeplastida
Gb_38014 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_41517 No alias transcription factor (SBP) 0.05 Archaeplastida
LOC_Os04g46580.1 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os04g56170.1 No alias transcription factor (SBP) 0.04 Archaeplastida
LOC_Os06g49010.4 No alias transcription factor (SBP) 0.06 Archaeplastida
LOC_Os07g32170.1 No alias transcription factor (SBP) 0.06 Archaeplastida
MA_10427464g0010 No alias transcription factor (SBP) 0.04 Archaeplastida
MA_15381g0010 No alias transcription factor (SBP) 0.03 Archaeplastida
MA_22749g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_7789506g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c16_7480V3.1 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Archaeplastida
Pp3c16_7490V3.1 No alias squamosa promoter binding protein-like 2 0.03 Archaeplastida
Pp3c4_6000V3.1 No alias squamosa promoter binding protein-like 8 0.04 Archaeplastida
Smo437670 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
Solyc05g015840.3.1 No alias transcription factor (SBP) 0.04 Archaeplastida
Zm00001e009093_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e010067_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e013795_P002 No alias transcription factor (SBP) 0.05 Archaeplastida
Zm00001e025110_P001 No alias transcription factor (SBP) 0.05 Archaeplastida
Zm00001e025234_P001 No alias transcription factor (SBP) 0.02 Archaeplastida
Zm00001e028442_P002 No alias transcription factor (SBP) 0.06 Archaeplastida
Zm00001e034628_P001 No alias transcription factor (SBP) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0005984 disaccharide metabolic process IEP Neighborhood
BP GO:0005991 trehalose metabolic process IEP Neighborhood
BP GO:0005992 trehalose biosynthetic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0009311 oligosaccharide metabolic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004333 SBP_dom 76 149
No external refs found!