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  5. Zm00001e021453_P001

Zm00001e021453_P001


Description : Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana (sp|q9fg16|pp367_arath : 295.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000789 (LandPlants) Phylogenetic Tree(s): OG_05_0000789_tree ,
OG_06_0014141 (SeedPlants) Phylogenetic Tree(s): OG_06_0014141_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e021453_P001
Cluster HCCA: Cluster_158

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00225420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
AMTR_s00032p00177680 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00039p00023570 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
AMTR_s00099p00036710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71490... 0.03 Archaeplastida
AMTR_s00147p00097570 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Archaeplastida
AMTR_s00439p00011030 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.06 Archaeplastida
AT2G22070 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Archaeplastida
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G39680 EMB2744 Pentatricopeptide repeat (PPR) superfamily protein 0.08 Archaeplastida
AT5G46460 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
Gb_00862 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_02037 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_02229 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_04077 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_04167 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_04428 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_05554 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_07638 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.03 Archaeplastida
Gb_09704 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_10478 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
Gb_11220 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_11545 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_11926 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_12556 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
Gb_14172 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
Gb_14324 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_14956 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_16448 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
Gb_16546 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_17076 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_17077 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 Archaeplastida
Gb_17092 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_17620 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_18745 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Gb_21567 No alias RNA editing factor (MEF19) 0.05 Archaeplastida
Gb_21580 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_23088 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_23798 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
Gb_24126 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_25130 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.03 Archaeplastida
Gb_26571 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_26694 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_27057 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_27381 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_27880 No alias RNA editing factor (ECB2/VAC1) 0.03 Archaeplastida
Gb_28037 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_28390 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
Gb_28393 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_28582 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_28902 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.04 Archaeplastida
Gb_29874 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
Gb_30523 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
Gb_31374 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_32099 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_32227 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_33959 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_35108 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
Gb_36081 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_36538 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
Gb_37516 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_37517 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_38068 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_38301 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_38680 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_39402 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_41317 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
Gb_41325 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
LOC_Os06g41040.1 No alias Putative pentatricopeptide repeat-containing protein... 0.09 Archaeplastida
MA_10277392g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_10430171g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
MA_112849g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_131437g0010 No alias RNA editing factor (MEF3) 0.03 Archaeplastida
MA_140208g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_20599g0020 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.02 Archaeplastida
MA_25515g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_30632g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_32723g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_33533g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_59148g0010 No alias RNA editing factor (MEF11) 0.02 Archaeplastida
MA_632994g0010 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
MA_656915g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_68933g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.02 Archaeplastida
MA_86739g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Smo102603 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.01 Archaeplastida
Smo228785 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
Smo424099 No alias Pentatricopeptide repeat-containing protein At4g31850,... 0.01 Archaeplastida
Smo77340 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo80365 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.01 Archaeplastida
Smo84657 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 Archaeplastida
Solyc01g110010.3.1 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.03 Archaeplastida
Solyc02g070710.3.1 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.14 Archaeplastida
Solyc03g093630.3.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Solyc03g097850.1.1 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
Solyc07g042760.1.1 No alias Pentatricopeptide repeat-containing protein At4g31070,... 0.04 Archaeplastida
Solyc08g023640.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Solyc08g076150.4.1 No alias Pentatricopeptide repeat-containing protein At1g31920... 0.04 Archaeplastida
Solyc09g082400.2.1 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.04 Archaeplastida
Solyc09g092050.4.1 No alias Pentatricopeptide repeat-containing protein At1g04840... 0.03 Archaeplastida
Solyc09g092150.1.1 No alias RNA editing factor (MEF21) 0.05 Archaeplastida
Solyc11g008970.1.1 No alias Pentatricopeptide repeat-containing protein At4g39952,... 0.03 Archaeplastida
Solyc11g017290.1.1 No alias Pentatricopeptide repeat-containing protein At1g31430... 0.03 Archaeplastida
Solyc11g062250.2.1 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.03 Archaeplastida
Solyc11g067210.1.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Zm00001e001918_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.05 Archaeplastida
Zm00001e007597_P001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Zm00001e010837_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.05 Archaeplastida
Zm00001e013116_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e015358_P001 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.07 Archaeplastida
Zm00001e018565_P001 No alias Pentatricopeptide repeat-containing protein At3g13880... 0.08 Archaeplastida
Zm00001e023504_P001 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Zm00001e027978_P001 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
Zm00001e030831_P001 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.04 Archaeplastida
Zm00001e033310_P001 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.03 Archaeplastida
Zm00001e035654_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.12 Archaeplastida
Zm00001e037600_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Zm00001e038629_P001 No alias no hits & (original description: none) 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 161 186
IPR002885 Pentatricopeptide_repeat 190 219
IPR002885 Pentatricopeptide_repeat 264 289
IPR002885 Pentatricopeptide_repeat 366 390
IPR002885 Pentatricopeptide_repeat 294 337
No external refs found!