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  5. Zm00001e021916_P002

Zm00001e021916_P002


Description : Pumilio homolog 5 OS=Arabidopsis thaliana (sp|q9ljx4|pum5_arath : 595.0)


Gene families : OG0000536 (Archaeplastida) Phylogenetic Tree(s): OG0000536_tree ,
OG_05_0000342 (LandPlants) Phylogenetic Tree(s): OG_05_0000342_tree ,
OG_06_0004029 (SeedPlants) Phylogenetic Tree(s): OG_06_0004029_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e021916_P002
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AT2G29190 APUM2, PUM2 pumilio 2 0.03 Archaeplastida
AT3G20250 PUM5, APUM5 pumilio 5 0.03 Archaeplastida
Cpa|evm.model.tig00001065.15 No alias No description available 0.02 Archaeplastida
GSVIVT01016507001 No alias Pumilio homolog 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01029553001 No alias Pumilio homolog 5 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01031557001 No alias Pumilio homolog 5 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os05g01910.1 No alias Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c3_36740V3.1 No alias pumilio 1 0.02 Archaeplastida
Pp3c3_36960V3.1 No alias pumilio 1 0.02 Archaeplastida
Solyc03g123980.4.1 No alias Pumilio homolog 5 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc06g005670.4.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc06g076340.3.1 No alias Pumilio homolog 1 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Zm00001e016242_P002 No alias Pumilio homolog 4 OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 781 810
IPR001313 Pumilio_RNA-bd_rpt 970 1000
IPR001313 Pumilio_RNA-bd_rpt 926 951
IPR001313 Pumilio_RNA-bd_rpt 854 883
IPR001313 Pumilio_RNA-bd_rpt 709 740
IPR001313 Pumilio_RNA-bd_rpt 890 922
IPR001313 Pumilio_RNA-bd_rpt 819 843
IPR001313 Pumilio_RNA-bd_rpt 745 777
No external refs found!