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  5. Zm00001e022095_P001

Zm00001e022095_P001


Description : RNA helicase (Prp2)


Gene families : OG0000159 (Archaeplastida) Phylogenetic Tree(s): OG0000159_tree ,
OG_05_0006093 (LandPlants) Phylogenetic Tree(s): OG_05_0006093_tree ,
OG_06_0005453 (SeedPlants) Phylogenetic Tree(s): OG_06_0005453_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e022095_P001
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00166450 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
AMTR_s00022p00074370 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.04 Archaeplastida
AMTR_s00025p00202360 evm_27.TU.AmTr_v1... Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
AMTR_s00110p00073830 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.06 Archaeplastida
AT1G32490 ESP3, EMB2733 RNA helicase family protein 0.05 Archaeplastida
AT2G35340 MEE29 helicase domain-containing protein 0.04 Archaeplastida
AT3G62310 No alias RNA helicase family protein 0.03 Archaeplastida
AT4G01020 No alias helicase domain-containing protein / IBR... 0.06 Archaeplastida
AT5G13010 EMB3011 RNA helicase family protein 0.05 Archaeplastida
Cpa|evm.model.tig00000842.2 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Cpa|evm.model.tig00020531.53 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.03 Archaeplastida
Cre07.g349100 No alias RNA processing.RNA splicing.spliceosome... 0.05 Archaeplastida
Cre08.g358563 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Cre24.g755347 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
GSVIVT01003434001 No alias ATP-dependent RNA helicase DEAH11, chloroplastic... 0.05 Archaeplastida
GSVIVT01007911001 No alias Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.1 Archaeplastida
GSVIVT01028153001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
GSVIVT01029863001 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.05 Archaeplastida
Gb_11931 No alias RNA helicase (Prp22) 0.02 Archaeplastida
Gb_13411 No alias RNA helicase (Prp16) 0.04 Archaeplastida
Gb_14270 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.04 Archaeplastida
Gb_22388 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
Gb_34264 No alias E3 ubiquitin ligase (RBR-Helicase) 0.02 Archaeplastida
LOC_Os01g11370.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
LOC_Os02g19860.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
LOC_Os07g32430.1 No alias RNA helicase (Prp16) 0.02 Archaeplastida
LOC_Os08g24760.1 No alias RNA helicase (Prp2) 0.09 Archaeplastida
MA_10435486g0020 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
MA_10436572g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_277016g0010 No alias RNA helicase (Prp2) 0.1 Archaeplastida
MA_34468g0010 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.02 Archaeplastida
MA_5383g0010 No alias RNA helicase (Prp16) 0.04 Archaeplastida
MA_8723931g0010 No alias RNA helicase (Prp16) 0.04 Archaeplastida
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 Archaeplastida
Mp3g17320.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Mp4g16380.1 No alias RNA helicase (Prp2) 0.02 Archaeplastida
Mp7g03460.1 No alias RNA helicase (Prp16) 0.05 Archaeplastida
Pp3c15_1470V3.1 No alias RNA helicase family protein 0.04 Archaeplastida
Pp3c1_18490V3.1 No alias RNA helicase family protein 0.09 Archaeplastida
Pp3c1_9270V3.1 No alias ATP-dependent RNA helicase, putative 0.03 Archaeplastida
Pp3c23_5290V3.1 No alias RNA helicase family protein 0.04 Archaeplastida
Pp3c24_1890V3.1 No alias RNA helicase family protein 0.03 Archaeplastida
Pp3c2_27130V3.1 No alias RNA helicase family protein 0.04 Archaeplastida
Pp3c9_18320V3.1 No alias RNA helicase family protein 0.02 Archaeplastida
Solyc01g079250.3.1 No alias helicase Prp43 of Intron-Lariat Spliceosome complex 0.03 Archaeplastida
Solyc03g115390.4.1 No alias RNA helicase (Prp2) 0.04 Archaeplastida
Solyc04g014210.3.1 No alias E3 ubiquitin ligase (RBR-Helicase) 0.03 Archaeplastida
Solyc05g015040.4.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 Archaeplastida
Solyc07g039550.4.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.06 Archaeplastida
Solyc09g008120.4.1 No alias RNA helicase (Prp22) 0.02 Archaeplastida
Solyc10g076910.2.1 No alias RNA helicase (Prp16) 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004484 mRNA guanylyltransferase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006370 7-methylguanosine mRNA capping IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008192 RNA guanylyltransferase activity IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0070568 guanylyltransferase activity IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR011709 DUF1605 482 559
IPR001650 Helicase_C 144 272
IPR007502 Helicase-assoc_dom 334 417
No external refs found!