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  5. AT3G26350

AT3G26350


Description : LOCATED IN: chloroplast; EXPRESSED IN: root, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13050.1); Has 3534 Blast hits to 2704 proteins in 342 species: Archae - 6; Bacteria - 192; Metazoa - 1076; Fungi - 505; Plants - 1162; Viruses - 224; Other Eukaryotes - 369 (source: NCBI BLink).


Gene families : OG0003681 (Archaeplastida) Phylogenetic Tree(s): OG0003681_tree ,
OG_05_0002684 (LandPlants) Phylogenetic Tree(s): OG_05_0002684_tree ,
OG_06_0001763 (SeedPlants) Phylogenetic Tree(s): OG_06_0001763_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G26350
Cluster HCCA: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
AT5G56070 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.02 Archaeplastida
MA_7502g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Smo431383 No alias No description available 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000726 non-recombinational repair IEP Neighborhood
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0003720 telomerase activity IEP Neighborhood
MF GO:0003721 telomerase RNA reverse transcriptase activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003964 RNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004003 ATP-dependent DNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005483 soluble NSF attachment protein activity IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006312 mitotic recombination IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007000 nucleolus organization IEP Neighborhood
BP GO:0007004 telomere maintenance via telomerase IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007062 sister chromatid cohesion IEP Neighborhood
BP GO:0007129 synapsis IEP Neighborhood
BP GO:0007131 reciprocal meiotic recombination IEP Neighborhood
BP GO:0007140 male meiotic nuclear division IEP Neighborhood
BP GO:0007143 female meiotic nuclear division IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
CC GO:0009330 DNA topoisomerase complex (ATP-hydrolyzing) IEP Neighborhood
BP GO:0009410 response to xenobiotic stimulus IEP Neighborhood
BP GO:0009913 epidermal cell differentiation IEP Neighborhood
BP GO:0010833 telomere maintenance via telomere lengthening IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0030307 positive regulation of cell growth IEP Neighborhood
BP GO:0030855 epithelial cell differentiation IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0035825 homologous recombination IEP Neighborhood
BP GO:0042138 meiotic DNA double-strand break formation IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
BP GO:0045927 positive regulation of growth IEP Neighborhood
BP GO:0050000 chromosome localization IEP Neighborhood
BP GO:0051026 chiasma assembly IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0061982 meiosis I cell cycle process IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Neighborhood
BP GO:0071897 DNA biosynthetic process IEP Neighborhood
BP GO:0080156 mitochondrial mRNA modification IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
BP GO:0140013 meiotic nuclear division IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1900864 mitochondrial RNA modification IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR004864 LEA_2 235 316
No external refs found!