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  5. Zm00001e022792_P001

Zm00001e022792_P001


Description : F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana (sp|q9lm55|fbk8_arath : 475.0)


Gene families : OG0004820 (Archaeplastida) Phylogenetic Tree(s): OG0004820_tree ,
OG_05_0004806 (LandPlants) Phylogenetic Tree(s): OG_05_0004806_tree ,
OG_06_0006370 (SeedPlants) Phylogenetic Tree(s): OG_06_0006370_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e022792_P001
Cluster HCCA: Cluster_365

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00220140 evm_27.TU.AmTr_v1... F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana 0.03 Archaeplastida
LOC_Os02g36520.1 No alias F-box/kelch-repeat protein At1g22040 OS=Arabidopsis... 0.06 Archaeplastida
Mp1g11590.1 No alias F-box/kelch-repeat protein At1g22040 OS=Arabidopsis... 0.02 Archaeplastida
Pp3c14_4360V3.1 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0016042 lipid catabolic process IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0030151 molybdenum ion binding IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0097526 spliceosomal tri-snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
InterPro domains Description Start Stop
IPR006652 Kelch_1 220 268
IPR006652 Kelch_1 172 217
IPR001810 F-box_dom 43 77
No external refs found!