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  5. Zm00001e022840_P001

Zm00001e022840_P001


Description : component RPL6 of LSU proteome component


Gene families : OG0002580 (Archaeplastida) Phylogenetic Tree(s): OG0002580_tree ,
OG_05_0002755 (LandPlants) Phylogenetic Tree(s): OG_05_0002755_tree ,
OG_06_0003200 (SeedPlants) Phylogenetic Tree(s): OG_06_0003200_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e022840_P001
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00218700 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 Archaeplastida
AT1G18540 No alias Ribosomal protein L6 family protein 0.33 Archaeplastida
AT1G74050 No alias Ribosomal protein L6 family protein 0.27 Archaeplastida
AT1G74060 No alias Ribosomal protein L6 family protein 0.19 Archaeplastida
Cpa|evm.model.tig00021127.127 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 Archaeplastida
Cre01.g011000 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.28 Archaeplastida
GSVIVT01032041001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 Archaeplastida
GSVIVT01033532001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.32 Archaeplastida
Gb_01604 No alias component RPL6 of LSU proteome component 0.21 Archaeplastida
LOC_Os02g37862.1 No alias component RPL6 of LSU proteome component 0.42 Archaeplastida
LOC_Os04g39700.1 No alias component RPL6 of LSU proteome component 0.34 Archaeplastida
MA_108607g0010 No alias component RPL6 of LSU proteome component 0.25 Archaeplastida
MA_807054g0010 No alias component RPL6 of LSU proteome component 0.03 Archaeplastida
Mp3g11670.1 No alias component RPL6 of LSU proteome component 0.36 Archaeplastida
Pp3c14_4100V3.1 No alias Ribosomal protein L6 family protein 0.09 Archaeplastida
Pp3c14_4160V3.1 No alias Ribosomal protein L6 family protein 0.17 Archaeplastida
Pp3c1_24300V3.1 No alias Ribosomal protein L6 family protein 0.15 Archaeplastida
Pp3c2_13300V3.1 No alias Ribosomal protein L6 family protein 0.16 Archaeplastida
Smo270686 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.19 Archaeplastida
Solyc04g014720.4.1 No alias component RPL6 of LSU proteome component 0.08 Archaeplastida
Solyc05g054070.4.1 No alias component RPL6 of LSU proteome component 0.12 Archaeplastida
Solyc11g012110.2.1 No alias component RPL6 of LSU proteome component 0.25 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
InterPro domains Description Start Stop
IPR000915 60S_ribosomal_L6E 112 219
No external refs found!