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  5. Zm00001e023044_P004

Zm00001e023044_P004


Description : component UPF2 of RNA quality control Exon Junction complex


Gene families : OG0003758 (Archaeplastida) Phylogenetic Tree(s): OG0003758_tree ,
OG_05_0006352 (LandPlants) Phylogenetic Tree(s): OG_05_0006352_tree ,
OG_06_0006889 (SeedPlants) Phylogenetic Tree(s): OG_06_0006889_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e023044_P004
Cluster HCCA: Cluster_270

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00123630 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.05 Archaeplastida
Cre17.g729250 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 Archaeplastida
GSVIVT01016353001 No alias RNA processing.RNA quality control Exon Junction complex... 0.04 Archaeplastida
Gb_41555 No alias component UPF2 of RNA quality control Exon Junction complex 0.02 Archaeplastida
LOC_Os02g42040.1 No alias component UPF2 of RNA quality control Exon Junction complex 0.05 Archaeplastida
Pp3c11_19990V3.1 No alias binding;RNA binding 0.03 Archaeplastida
Smo440923 No alias RNA processing.RNA quality control Exon Junction complex... 0.04 Archaeplastida
Solyc04g049770.4.1 No alias component UPF2 of RNA quality control Exon Junction complex 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR007193 Up-fram_suppressor-2 994 1130
IPR003890 MIF4G-like_typ-3 679 872
IPR003890 MIF4G-like_typ-3 475 661
No external refs found!