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  5. Zm00001e023137_P001

Zm00001e023137_P001


Description : RDR2-polymerase regulator protein CLSY3/4


Gene families : OG0000450 (Archaeplastida) Phylogenetic Tree(s): OG0000450_tree ,
OG_05_0000597 (LandPlants) Phylogenetic Tree(s): OG_05_0000597_tree ,
OG_06_0000338 (SeedPlants) Phylogenetic Tree(s): OG_06_0000338_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e023137_P001
Cluster HCCA: Cluster_141

Target Alias Description ECC score Gene Family Method Actions
AT2G21450 CHR34 chromatin remodeling 34 0.03 Archaeplastida
Cpa|evm.model.tig00000733.15 No alias Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01013277001 No alias RNA biosynthesis.siRNA biogenesis.CLSY3/4 regulator protein 0.03 Archaeplastida
LOC_Os03g06920.1 No alias chromatin remodeling factor (DRD1). component DRD1 of... 0.06 Archaeplastida
LOC_Os07g25390.1 No alias chromatin remodeling factor (DRD1). component DRD1 of... 0.03 Archaeplastida
Pp3c2_3510V3.1 No alias SNF2 domain-containing protein / helicase... 0.03 Archaeplastida
Solyc01g060460.2.1 No alias RDR2-polymerase regulator protein CLSY3/4 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009143 nucleoside triphosphate catabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
CC GO:1902554 serine/threonine protein kinase complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
CC GO:1990316 Atg1/ULK1 kinase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 1159 1266
IPR000330 SNF2_N 793 1088
No external refs found!