AT3G27170 (ATCLC-B, CLC-B)

Aliases : ATCLC-B, CLC-B

Description : chloride channel B

Gene families : OG0000546 (Archaeplastida) Phylogenetic Tree(s): OG0000546_tree ,
OG_05_0012010 (LandPlants) Phylogenetic Tree(s): OG_05_0012010_tree ,
OG_06_0012061 (SeedPlants) Phylogenetic Tree(s): OG_06_0012061_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G27170
Cluster	HCCA: Cluster_67

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01012828001	No alias	Solute transport.carrier-mediated transport.CLC anion...	0.08	Archaeplastida
LOC_Os04g55210.1	No alias	anion channel / anion:proton antiporter (CLC)	0.03	Archaeplastida
LOC_Os08g20570.1	No alias	anion channel / anion:proton antiporter (CLC)	0.05	Archaeplastida
LOC_Os12g25200.1	No alias	anion channel / anion:proton antiporter (CLC)	0.06	Archaeplastida
Solyc01g103140.3.1	No alias	anion channel / anion:proton antiporter (CLC)	0.03	Archaeplastida
Solyc02g068080.3.1	No alias	anion channel / anion:proton antiporter (CLC)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	None	Extended
MF	GO:0005244	voltage-gated ion channel activity	None	Extended
MF	GO:0005247	voltage-gated chloride channel activity	ISS	Interproscan
MF	GO:0005253	anion channel activity	ISS	Interproscan
MF	GO:0005254	chloride channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	TAS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005774	vacuolar membrane	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	None	Extended
BP	GO:0006820	anion transport	None	Extended
BP	GO:0006821	chloride transport	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008308	voltage-gated anion channel activity	None	Extended
MF	GO:0008324	cation transmembrane transporter activity	None	Extended
MF	GO:0008509	anion transmembrane transporter activity	None	Extended
MF	GO:0009671	nitrate:proton symporter activity	IDA	Interproscan
CC	GO:0009705	plant-type vacuole membrane	IDA	Interproscan
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	None	Extended
MF	GO:0015078	proton transmembrane transporter activity	None	Extended
MF	GO:0015103	inorganic anion transmembrane transporter activity	None	Extended
MF	GO:0015108	chloride transmembrane transporter activity	None	Extended
MF	GO:0015112	nitrate transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015291	secondary active transmembrane transporter activity	None	Extended
MF	GO:0015293	symporter activity	None	Extended
MF	GO:0015294	solute:cation symporter activity	None	Extended
MF	GO:0015295	solute:proton symporter activity	None	Extended
MF	GO:0015296	anion:cation symporter activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
MF	GO:0015513	high-affinity secondary active nitrite transmembrane transporter activity	None	Extended
BP	GO:0015698	inorganic anion transport	None	Extended
CC	GO:0016020	membrane	None	Extended
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022832	voltage-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022839	ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0022890	inorganic cation transmembrane transporter activity	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044437	vacuolar part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098805	whole membrane	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005102	signaling receptor binding	IEP	Neighborhood
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	Neighborhood
MF	GO:0005402	carbohydrate:cation symporter activity	IEP	Neighborhood
CC	GO:0005886	plasma membrane	IEP	Neighborhood
BP	GO:0006089	lactate metabolic process	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006857	oligopeptide transport	IEP	Neighborhood
BP	GO:0006865	amino acid transport	IEP	Neighborhood
BP	GO:0006970	response to osmotic stress	IEP	Neighborhood
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Neighborhood
BP	GO:0009438	methylglyoxal metabolic process	IEP	Neighborhood
BP	GO:0009624	response to nematode	IEP	Neighborhood
BP	GO:0009651	response to salt stress	IEP	Neighborhood
BP	GO:0010264	myo-inositol hexakisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0015695	organic cation transport	IEP	Neighborhood
BP	GO:0015696	ammonium transport	IEP	Neighborhood
BP	GO:0015711	organic anion transport	IEP	Neighborhood
BP	GO:0015804	neutral amino acid transport	IEP	Neighborhood
BP	GO:0015824	proline transport	IEP	Neighborhood
BP	GO:0015837	amine transport	IEP	Neighborhood
BP	GO:0015843	methylammonium transport	IEP	Neighborhood
BP	GO:0015849	organic acid transport	IEP	Neighborhood
MF	GO:0016597	amino acid binding	IEP	Neighborhood
BP	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	IEP	Neighborhood
BP	GO:0019751	polyol metabolic process	IEP	Neighborhood
BP	GO:0019755	one-carbon compound transport	IEP	Neighborhood
MF	GO:0031406	carboxylic acid binding	IEP	Neighborhood
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	Neighborhood
BP	GO:0033517	myo-inositol hexakisphosphate metabolic process	IEP	Neighborhood
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	Neighborhood
BP	GO:0040007	growth	IEP	Neighborhood
BP	GO:0042182	ketone catabolic process	IEP	Neighborhood
BP	GO:0042631	cellular response to water deprivation	IEP	Neighborhood
MF	GO:0043177	organic acid binding	IEP	Neighborhood
BP	GO:0043647	inositol phosphate metabolic process	IEP	Neighborhood
BP	GO:0046165	alcohol biosynthetic process	IEP	Neighborhood
BP	GO:0046173	polyol biosynthetic process	IEP	Neighborhood
BP	GO:0046185	aldehyde catabolic process	IEP	Neighborhood
BP	GO:0046942	carboxylic acid transport	IEP	Neighborhood
BP	GO:0051596	methylglyoxal catabolic process	IEP	Neighborhood
BP	GO:0061727	methylglyoxal catabolic process to lactate	IEP	Neighborhood
BP	GO:0070417	cellular response to cold	IEP	Neighborhood
MF	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	IEP	Neighborhood
BP	GO:0071229	cellular response to acid chemical	IEP	Neighborhood
BP	GO:0071462	cellular response to water stimulus	IEP	Neighborhood
BP	GO:0071470	cellular response to osmotic stress	IEP	Neighborhood
BP	GO:0071472	cellular response to salt stress	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000644	CBS_dom	710	761
IPR001807	Cl-channel_volt-gated	142	556

External Links

No external refs found!

AT3G27170 (ATCLC-B, CLC-B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation