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  5. Zm00001e023246_P001

Zm00001e023246_P001


Description : PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana (sp|q947d2|praf1_arath : 500.0)


Gene families : OG0000543 (Archaeplastida) Phylogenetic Tree(s): OG0000543_tree ,
OG_05_0000407 (LandPlants) Phylogenetic Tree(s): OG_05_0000407_tree ,
OG_06_0000284 (SeedPlants) Phylogenetic Tree(s): OG_06_0000284_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e023246_P001
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
Gb_13554 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
Gb_31523 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.05 Archaeplastida
Gb_40615 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
LOC_Os02g45980.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.07 Archaeplastida
LOC_Os04g58960.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.07 Archaeplastida
LOC_Os05g01610.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.06 Archaeplastida
LOC_Os05g31920.2 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.04 Archaeplastida
MA_10427405g0020 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 Archaeplastida
MA_10435870g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_136157g0010 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.06 Archaeplastida
Smo180358 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 Archaeplastida
Smo430894 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 Archaeplastida
Solyc03g005590.2.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida
Solyc11g065120.3.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.04 Archaeplastida
Solyc12g099740.2.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001849 PH_domain 20 126
IPR000408 Reg_chr_condens 487 535
IPR000408 Reg_chr_condens 318 366
IPR000408 Reg_chr_condens 425 473
IPR000408 Reg_chr_condens 539 589
IPR000408 Reg_chr_condens 592 641
IPR000408 Reg_chr_condens 369 420
IPR013591 Brevis_radix_dom 1007 1059
IPR000306 Znf_FYVE 650 711
No external refs found!