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  5. Zm00001e023282_P002

Zm00001e023282_P002


Description : G2-like GARP transcription factor


Gene families : OG0000027 (Archaeplastida) Phylogenetic Tree(s): OG0000027_tree ,
OG_05_0000101 (LandPlants) Phylogenetic Tree(s): OG_05_0000101_tree ,
OG_06_0000453 (SeedPlants) Phylogenetic Tree(s): OG_06_0000453_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e023282_P002
Cluster HCCA: Cluster_321

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00263730 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.05 Archaeplastida
AMTR_s00024p00053860 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
AMTR_s00025p00224230 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
AMTR_s00131p00063460 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
AMTR_s00142p00049490 evm_27.TU.AmTr_v1... Nutrient uptake.phosphorus assimilation.phosphate... 0.02 Archaeplastida
AT1G14600 No alias Homeodomain-like superfamily protein 0.09 Archaeplastida
AT1G32240 KAN2 Homeodomain-like superfamily protein 0.08 Archaeplastida
AT2G02060 No alias Homeodomain-like superfamily protein 0.06 Archaeplastida
AT2G42660 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
AT4G04605 No alias No description available 0.03 Archaeplastida
AT4G13640 UNE16 Homeodomain-like superfamily protein 0.05 Archaeplastida
AT5G06800 No alias myb-like HTH transcriptional regulator family protein 0.03 Archaeplastida
AT5G18240 ATMYR1, MYR1 myb-related protein 1 0.03 Archaeplastida
AT5G42630 KAN4, ATS Homeodomain-like superfamily protein 0.04 Archaeplastida
GSVIVT01007064001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01015900001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01020827001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
GSVIVT01028403001 No alias Nutrient uptake.phosphorus assimilation.phosphate... 0.04 Archaeplastida
GSVIVT01029458001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01030315001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
Gb_13931 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Gb_40510 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Gb_41007 No alias G2-like GARP transcription factor 0.03 Archaeplastida
LOC_Os02g07170.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
LOC_Os02g07770.1 No alias G2-like GARP transcription factor 0.07 Archaeplastida
LOC_Os02g14490.1 No alias Putative Myb family transcription factor At1g14600... 0.06 Archaeplastida
LOC_Os02g46940.1 No alias G2-like GARP transcription factor 0.05 Archaeplastida
LOC_Os03g03760.1 No alias G2-like GARP transcription factor 0.05 Archaeplastida
LOC_Os03g20900.1 No alias G2-like GARP transcription factor 0.07 Archaeplastida
LOC_Os04g47890.1 No alias G2-like GARP transcription factor 0.11 Archaeplastida
LOC_Os05g40960.1 No alias G2-like GARP transcription factor 0.07 Archaeplastida
LOC_Os06g35140.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
LOC_Os06g45410.1 No alias G2-like GARP transcription factor 0.02 Archaeplastida
LOC_Os06g45890.1 No alias G2-like GARP transcription factor 0.04 Archaeplastida
LOC_Os08g06370.1 No alias G2-like GARP transcription factor 0.04 Archaeplastida
LOC_Os08g25799.1 No alias G2-like GARP transcription factor 0.06 Archaeplastida
LOC_Os08g33050.1 No alias G2-like GARP transcription factor 0.04 Archaeplastida
LOC_Os08g33750.1 No alias G2-like GARP transcription factor 0.06 Archaeplastida
LOC_Os09g12770.1 No alias G2-like GARP transcription factor 0.02 Archaeplastida
LOC_Os10g39550.1 No alias G2-like GARP transcription factor 0.04 Archaeplastida
MA_201937g0020 No alias Myb-related protein 1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_52379g0010 No alias G2-like GARP transcription factor 0.03 Archaeplastida
MA_6619111g0010 No alias G2-like GARP transcription factor 0.07 Archaeplastida
MA_937875g0010 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Mp3g04970.1 No alias G2-like GARP transcription factor 0.05 Archaeplastida
Mp4g08700.1 No alias G2-like GARP transcription factor 0.05 Archaeplastida
Pp3c13_23440V3.1 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
Pp3c13_9170V3.1 No alias myb-like HTH transcriptional regulator family protein 0.04 Archaeplastida
Pp3c14_26270V3.1 No alias myb-like HTH transcriptional regulator family protein 0.05 Archaeplastida
Pp3c19_2940V3.1 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
Pp3c1_41530V3.1 No alias Homeodomain-like superfamily protein 0.02 Archaeplastida
Pp3c21_2850V3.1 No alias Homeodomain-like superfamily protein 0.02 Archaeplastida
Pp3c22_8217V3.1 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
Pp3c23_11030V3.1 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
Pp3c3_23200V3.1 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
Pp3c4_20290V3.1 No alias Homeodomain-like superfamily protein 0.04 Archaeplastida
Pp3c4_6870V3.1 No alias myb-like HTH transcriptional regulator family protein 0.02 Archaeplastida
Pp3c7_20870V3.1 No alias myb-like HTH transcriptional regulator family protein 0.03 Archaeplastida
Smo149357 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Smo414222 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
Smo423935 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
Solyc04g008480.2.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Solyc05g007890.4.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Solyc06g066340.4.1 No alias G2-like GARP transcription factor 0.07 Archaeplastida
Solyc07g045000.4.1 No alias Putative Myb family transcription factor At1g14600... 0.04 Archaeplastida
Solyc10g078720.2.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Solyc12g017370.3.1 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Zm00001e005797_P001 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Zm00001e007231_P002 No alias Putative Myb family transcription factor At1g14600... 0.05 Archaeplastida
Zm00001e015401_P002 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e015514_P001 No alias G2-like GARP transcription factor 0.04 Archaeplastida
Zm00001e030364_P002 No alias G2-like GARP transcription factor 0.06 Archaeplastida
Zm00001e037761_P001 No alias G2-like GARP transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 171 222
No external refs found!