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  5. Zm00001e023728_P001

Zm00001e023728_P001


Description : ligand-gated cation channel (GLR)


Gene families : OG0000085 (Archaeplastida) Phylogenetic Tree(s): OG0000085_tree ,
OG_05_0000261 (LandPlants) Phylogenetic Tree(s): OG_05_0000261_tree ,
OG_06_0000114 (SeedPlants) Phylogenetic Tree(s): OG_06_0000114_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e023728_P001
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00178690 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
AMTR_s00019p00180760 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.02 Archaeplastida
AMTR_s00019p00182630 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
AMTR_s00019p00183450 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
AMTR_s00021p00172130 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
AMTR_s00021p00176450 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.06 Archaeplastida
AMTR_s00055p00227100 evm_27.TU.AmTr_v1... Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
AT2G29100 ATGLR2.9, GLR2.9 glutamate receptor 2.9 0.03 Archaeplastida
AT2G29110 GLR2.8, ATGLR2.8 glutamate receptor 2.8 0.05 Archaeplastida
AT2G29120 GLR2.7, ATGLR2.7 glutamate receptor 2.7 0.04 Archaeplastida
AT2G32390 ATGLR3.5, GLR6, GLR3.5 glutamate receptor 3.5 0.05 Archaeplastida
AT2G32400 GLR3.7, ATGLR3.7, GLR5 glutamate receptor 5 0.04 Archaeplastida
AT3G04110 ATGLR1.1, GLR1.1, GLR1 glutamate receptor 1.1 0.03 Archaeplastida
AT5G11210 GLR2.5, ATGLR2.5 glutamate receptor 2.5 0.03 Archaeplastida
AT5G48400 ATGLR1.2, GLR1.2 Glutamate receptor family protein 0.04 Archaeplastida
AT5G48410 ATGLR1.3, GLR1.3 glutamate receptor 1.3 0.03 Archaeplastida
GSVIVT01014244001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
GSVIVT01033129001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.03 Archaeplastida
GSVIVT01033142001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.04 Archaeplastida
GSVIVT01033150001 No alias Solute transport.channels.GLR ligand-gated cation channel 0.06 Archaeplastida
Gb_06330 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Gb_20613 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
Gb_27767 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
Gb_28362 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
LOC_Os02g54640.1 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
LOC_Os09g26144.1 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
LOC_Os09g31160.1 No alias ligand-gated cation channel (GLR) 0.05 Archaeplastida
MA_101552g0010 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
MA_10226232g0010 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
MA_10426811g0010 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
MA_10428186g0010 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
MA_10428186g0020 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
MA_10428521g0010 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
MA_10434521g0010 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
MA_6222576g0010 No alias ligand-gated cation channel (GLR) 0.06 Archaeplastida
MA_7872524g0010 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
MA_88153g0010 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
MA_958834g0010 No alias ligand-gated cation channel (GLR) 0.06 Archaeplastida
MA_9796468g0010 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
MA_9896648g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g077290.2.1 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Solyc06g063170.3.1 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
Solyc06g063180.3.1 No alias ligand-gated cation channel (GLR) 0.02 Archaeplastida
Solyc06g063190.3.1 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Solyc06g063200.2.1 No alias ligand-gated cation channel (GLR) 0.07 Archaeplastida
Solyc06g063210.3.1 No alias ligand-gated cation channel (GLR) 0.04 Archaeplastida
Solyc08g006500.4.1 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida
Zm00001e009847_P001 No alias ligand-gated cation channel (GLR) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001638 Solute-binding_3/MltF_N 259 341
IPR001828 ANF_lig-bd_rcpt 3 180
No external refs found!