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  5. Zm00001e023806_P001

Zm00001e023806_P001


Description : Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana (sp|o22197|rhc1a_arath : 134.0)


Gene families : OG0000041 (Archaeplastida) Phylogenetic Tree(s): OG0000041_tree ,
OG_05_0000046 (LandPlants) Phylogenetic Tree(s): OG_05_0000046_tree ,
OG_06_0001181 (SeedPlants) Phylogenetic Tree(s): OG_06_0001181_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e023806_P001
Cluster HCCA: Cluster_264

Target Alias Description ECC score Gene Family Method Actions
AT1G60360 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT1G68180 No alias RING/U-box superfamily protein 0.04 Archaeplastida
Cpa|evm.model.tig00000571.7 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 Archaeplastida
LOC_Os11g02670.1 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.04 Archaeplastida
MA_413614g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc01g104260.3.1 No alias Probable E3 ubiquitin-protein ligase RHC1A... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 228 270
No external refs found!