AT3G27960


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0000558 (Archaeplastida) Phylogenetic Tree(s): OG0000558_tree ,
OG_05_0001108 (LandPlants) Phylogenetic Tree(s): OG_05_0001108_tree ,
OG_06_0003036 (SeedPlants) Phylogenetic Tree(s): OG_06_0003036_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G27960
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01007760001 No alias Protein KINESIN LIGHT CHAIN-RELATED 3 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01032474001 No alias Protein KINESIN LIGHT CHAIN-RELATED 2 OS=Arabidopsis thaliana 0.04 Archaeplastida
Gb_01173 No alias Protein KINESIN LIGHT CHAIN-RELATED 3 OS=Arabidopsis... 0.08 Archaeplastida
Gb_24147 No alias regulatory protein (CMU) of microtubule-dependent CSC insertion 0.03 Archaeplastida
LOC_Os02g01960.1 No alias regulatory protein (CMU) of microtubule-dependent CSC insertion 0.04 Archaeplastida
LOC_Os02g47880.1 No alias regulatory protein (CMU) of microtubule-dependent CSC insertion 0.05 Archaeplastida
MA_10428479g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_50635g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_760658g0010 No alias regulatory protein (CMU) of microtubule-dependent CSC insertion 0.03 Archaeplastida
Pp3c5_15990V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
Solyc03g114320.4.1 No alias Protein KINESIN LIGHT CHAIN-RELATED 3 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e013426_P003 No alias regulatory protein (CMU) of microtubule-dependent CSC insertion 0.04 Archaeplastida
Zm00001e023340_P002 No alias regulatory protein (CMU) of microtubule-dependent CSC insertion 0.06 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0009860 pollen tube growth IEP Interproscan
BP GO:0031347 regulation of defense response IMP Interproscan
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005451 monovalent cation:proton antiporter activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006814 sodium ion transport IEP Neighborhood
BP GO:0007155 cell adhesion IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009225 nucleotide-sugar metabolic process IEP Neighborhood
BP GO:0009834 plant-type secondary cell wall biogenesis IEP Neighborhood
BP GO:0010051 xylem and phloem pattern formation IEP Neighborhood
BP GO:0010154 fruit development IEP Neighborhood
BP GO:0010351 lithium ion transport IEP Neighborhood
BP GO:0010383 cell wall polysaccharide metabolic process IEP Neighborhood
BP GO:0010410 hemicellulose metabolic process IEP Neighborhood
BP GO:0010413 glucuronoxylan metabolic process IEP Neighborhood
BP GO:0010417 glucuronoxylan biosynthetic process IEP Neighborhood
MF GO:0015081 sodium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0015385 sodium:proton antiporter activity IEP Neighborhood
MF GO:0015491 cation:cation antiporter activity IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
BP GO:0019321 pentose metabolic process IEP Neighborhood
BP GO:0022610 biological adhesion IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
BP GO:0030838 positive regulation of actin filament polymerization IEP Neighborhood
BP GO:0031334 positive regulation of protein complex assembly IEP Neighborhood
BP GO:0032271 regulation of protein polymerization IEP Neighborhood
BP GO:0032273 positive regulation of protein polymerization IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0042285 xylosyltransferase activity IEP Neighborhood
BP GO:0042732 D-xylose metabolic process IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044038 cell wall macromolecule biosynthetic process IEP Neighborhood
BP GO:0044089 positive regulation of cellular component biogenesis IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
BP GO:0045010 actin nucleation IEP Neighborhood
BP GO:0045491 xylan metabolic process IEP Neighborhood
BP GO:0045492 xylan biosynthetic process IEP Neighborhood
MF GO:0048040 UDP-glucuronate decarboxylase activity IEP Neighborhood
BP GO:0051493 regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051495 positive regulation of cytoskeleton organization IEP Neighborhood
BP GO:0070589 cellular component macromolecule biosynthetic process IEP Neighborhood
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
MF GO:0099516 ion antiporter activity IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
BP GO:1902903 regulation of supramolecular fiber organization IEP Neighborhood
BP GO:1902905 positive regulation of supramolecular fiber organization IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!