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  5. Zm00001e024139_P001

Zm00001e024139_P001


Description : Pentatricopeptide repeat-containing protein At1g22960, mitochondrial OS=Arabidopsis thaliana (sp|p0c7q9|ppr56_arath : 398.0)


Gene families : OG0010115 (Archaeplastida) Phylogenetic Tree(s): OG0010115_tree ,
OG_05_0010163 (LandPlants) Phylogenetic Tree(s): OG_05_0010163_tree ,
OG_06_0009067 (SeedPlants) Phylogenetic Tree(s): OG_06_0009067_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e024139_P001
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00185360 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g22960,... 0.02 Archaeplastida
AMTR_s01818p00007440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g22960,... 0.07 Archaeplastida
Gb_34150 No alias Pentatricopeptide repeat-containing protein At1g22960,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 582 614
IPR002885 Pentatricopeptide_repeat 309 339
IPR002885 Pentatricopeptide_repeat 235 281
IPR002885 Pentatricopeptide_repeat 624 670
IPR002885 Pentatricopeptide_repeat 411 457
IPR002885 Pentatricopeptide_repeat 341 390
IPR002885 Pentatricopeptide_repeat 516 564
No external refs found!