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  5. AT3G28180

AT3G28180 (ATCSLC04, CSLC04,...)


Aliases : ATCSLC04, CSLC04, CSLC4, ATCSLC4

Description : Cellulose-synthase-like C4


Gene families : OG0000194 (Archaeplastida) Phylogenetic Tree(s): OG0000194_tree ,
OG_05_0000643 (LandPlants) Phylogenetic Tree(s): OG_05_0000643_tree ,
OG_06_0000676 (SeedPlants) Phylogenetic Tree(s): OG_06_0000676_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G28180
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AT4G07960 ATCSLC12, CSLC12 Cellulose-synthase-like C12 0.03 Archaeplastida
AT4G16590 ATCSLA1, ATCSLA01, CSLA01 cellulose synthase-like A01 0.03 Archaeplastida
GSVIVT01002010001 No alias Cell wall.hemicellulose.xyloglucan.synthesis.CSLC-type... 0.03 Archaeplastida
GSVIVT01009290001 No alias Cell wall.hemicellulose.xyloglucan.synthesis.CSLC-type... 0.11 Archaeplastida
GSVIVT01016135001 No alias Cell wall.hemicellulose.xyloglucan.synthesis.CSLC-type... 0.04 Archaeplastida
GSVIVT01031405001 No alias Cell wall.hemicellulose.heteromannan.synthesis.mannan... 0.04 Archaeplastida
GSVIVT01033168001 No alias Cell wall.hemicellulose.xyloglucan.synthesis.CSLC-type... 0.07 Archaeplastida
GSVIVT01033767001 No alias Cell wall.hemicellulose.heteromannan.synthesis.mannan... 0.08 Archaeplastida
Gb_05418 No alias 1,4-beta-glucan synthase (CSLC) 0.03 Archaeplastida
Gb_21966 No alias mannan synthase (CSLA) 0.02 Archaeplastida
Gb_24488 No alias 1,4-beta-glucan synthase (CSLC) 0.06 Archaeplastida
Gb_27616 No alias Enzyme classification.EC_2 transferases.EC_2.4... 0.06 Archaeplastida
Gb_28041 No alias Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis... 0.02 Archaeplastida
Gb_35783 No alias 1,4-beta-glucan synthase (CSLC) 0.04 Archaeplastida
LOC_Os02g09930.1 No alias mannan synthase (CSLA) 0.04 Archaeplastida
LOC_Os08g33740.1 No alias mannan synthase (CSLA) 0.03 Archaeplastida
MA_10426467g0010 No alias Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis... 0.02 Archaeplastida
MA_10426467g0020 No alias Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis... 0.03 Archaeplastida
MA_10429365g0010 No alias 1,4-beta-glucan synthase (CSLC) 0.05 Archaeplastida
MA_10431741g0020 No alias 1,4-beta-glucan synthase (CSLC) 0.05 Archaeplastida
MA_10432355g0010 No alias Probable xyloglucan glycosyltransferase 3 OS=Oryza... 0.02 Archaeplastida
MA_449559g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_5581568g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_712121g0010 No alias Probable xyloglucan glycosyltransferase 9 OS=Oryza... 0.05 Archaeplastida
MA_9381137g0010 No alias Probable xyloglucan glycosyltransferase 2 OS=Oryza... 0.05 Archaeplastida
MA_96942g0010 No alias mannan synthase (CSLA) 0.03 Archaeplastida
Mp1g22770.1 No alias mannan synthase (CSLA) 0.03 Archaeplastida
Pp3c14_13750V3.1 No alias Nucleotide-diphospho-sugar transferases superfamily protein 0.04 Archaeplastida
Pp3c14_740V3.1 No alias cellulose synthase-like A3 0.03 Archaeplastida
Pp3c17_19670V3.1 No alias Nucleotide-diphospho-sugar transferases superfamily protein 0.04 Archaeplastida
Smo230176 No alias Cell wall.hemicellulose.heteromannan.synthesis.mannan... 0.02 Archaeplastida
Solyc02g089640.3.1 No alias 1,4-beta-glucan synthase (CSLC) 0.06 Archaeplastida
Solyc04g077470.3.1 No alias 1,4-beta-glucan synthase (CSLC) 0.03 Archaeplastida
Solyc08g006310.3.1 No alias 1,4-beta-glucan synthase (CSLC) 0.03 Archaeplastida
Solyc10g083670.3.1 No alias mannan synthase (CSLA) 0.08 Archaeplastida
Solyc11g066820.2.1 No alias mannan synthase (CSLA) 0.03 Archaeplastida
Zm00001e022456_P001 No alias mannan synthase (CSLA) 0.03 Archaeplastida
Zm00001e028988_P001 No alias 1,4-beta-glucan synthase (CSLC) 0.06 Archaeplastida
Zm00001e032112_P001 No alias 1,4-beta-glucan synthase (CSLC) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005768 endosome IDA Interproscan
CC GO:0005794 Golgi apparatus IDA Interproscan
CC GO:0005794 Golgi apparatus ISM Interproscan
CC GO:0005802 trans-Golgi network IDA Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
MF GO:0016757 transferase activity, transferring glycosyl groups ISS Interproscan
MF GO:0016759 cellulose synthase activity ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
BP GO:0000902 cell morphogenesis IEP Neighborhood
BP GO:0001558 regulation of cell growth IEP Neighborhood
MF GO:0005199 structural constituent of cell wall IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005773 vacuole IEP Neighborhood
CC GO:0005887 integral component of plasma membrane IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006071 glycerol metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0007584 response to nutrient IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008156 negative regulation of DNA replication IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
BP GO:0008361 regulation of cell size IEP Neighborhood
MF GO:0008378 galactosyltransferase activity IEP Neighborhood
BP GO:0008610 lipid biosynthetic process IEP Neighborhood
MF GO:0008889 glycerophosphodiester phosphodiesterase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009411 response to UV IEP Neighborhood
CC GO:0009505 plant-type cell wall IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
BP GO:0009645 response to low light intensity stimulus IEP Neighborhood
BP GO:0009653 anatomical structure morphogenesis IEP Neighborhood
BP GO:0009664 plant-type cell wall organization IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009741 response to brassinosteroid IEP Neighborhood
BP GO:0009742 brassinosteroid mediated signaling pathway IEP Neighborhood
BP GO:0009825 multidimensional cell growth IEP Neighborhood
BP GO:0009826 unidimensional cell growth IEP Neighborhood
BP GO:0009827 plant-type cell wall modification IEP Neighborhood
BP GO:0009831 plant-type cell wall modification involved in multidimensional cell growth IEP Neighborhood
BP GO:0009832 plant-type cell wall biogenesis IEP Neighborhood
BP GO:0009834 plant-type secondary cell wall biogenesis IEP Neighborhood
BP GO:0009910 negative regulation of flower development IEP Neighborhood
BP GO:0009932 cell tip growth IEP Neighborhood
BP GO:0010026 trichome differentiation IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010383 cell wall polysaccharide metabolic process IEP Neighborhood
BP GO:0010393 galacturonan metabolic process IEP Neighborhood
BP GO:0010442 guard cell morphogenesis IEP Neighborhood
BP GO:0010583 response to cyclopentenone IEP Neighborhood
BP GO:0010948 negative regulation of cell cycle process IEP Neighborhood
BP GO:0014070 response to organic cyclic compound IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
BP GO:0016125 sterol metabolic process IEP Neighborhood
BP GO:0016126 sterol biosynthetic process IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
BP GO:0019400 alditol metabolic process IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030308 negative regulation of cell growth IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
CC GO:0031226 intrinsic component of plasma membrane IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
BP GO:0032875 regulation of DNA endoreduplication IEP Neighborhood
BP GO:0032876 negative regulation of DNA endoreduplication IEP Neighborhood
BP GO:0032989 cellular component morphogenesis IEP Neighborhood
BP GO:0033273 response to vitamin IEP Neighborhood
BP GO:0033591 response to L-ascorbic acid IEP Neighborhood
BP GO:0033993 response to lipid IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
BP GO:0042547 cell wall modification involved in multidimensional cell growth IEP Neighborhood
CC GO:0042995 cell projection IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043401 steroid hormone mediated signaling pathway IEP Neighborhood
BP GO:0043473 pigmentation IEP Neighborhood
BP GO:0043476 pigment accumulation IEP Neighborhood
BP GO:0043478 pigment accumulation in response to UV light IEP Neighborhood
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP Neighborhood
BP GO:0043480 pigment accumulation in tissues IEP Neighborhood
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0045488 pectin metabolic process IEP Neighborhood
BP GO:0045489 pectin biosynthetic process IEP Neighborhood
BP GO:0045926 negative regulation of growth IEP Neighborhood
MF GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
MF GO:0048531 beta-1,3-galactosyltransferase activity IEP Neighborhood
BP GO:0048588 developmental cell growth IEP Neighborhood
BP GO:0048589 developmental growth IEP Neighborhood
BP GO:0048767 root hair elongation IEP Neighborhood
BP GO:0048869 cellular developmental process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051053 negative regulation of DNA metabolic process IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0052541 plant-type cell wall cellulose metabolic process IEP Neighborhood
BP GO:0052546 cell wall pectin metabolic process IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0060560 developmental growth involved in morphogenesis IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Neighborhood
CC GO:0090406 pollen tube IEP Neighborhood
CC GO:0120025 plasma membrane bounded cell projection IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
BP GO:2000038 regulation of stomatal complex development IEP Neighborhood
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Neighborhood
InterPro domains Description Start Stop
IPR001173 Glyco_trans_2-like 293 499
No external refs found!