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  5. AT3G28660

AT3G28660


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0013931 (Archaeplastida) Phylogenetic Tree(s): OG0013931_tree ,
OG_05_0000789 (LandPlants) Phylogenetic Tree(s): OG_05_0000789_tree ,
OG_06_0000692 (SeedPlants) Phylogenetic Tree(s): OG_06_0000692_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G28660
Cluster HCCA: Cluster_309

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00243230 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
AT3G28640 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Archaeplastida
LOC_Os03g52475.1 No alias Pentatricopeptide repeat-containing protein At3g28660... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
MF GO:0004016 adenylate cyclase activity IEP Neighborhood
BP GO:0006555 methionine metabolic process IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0009086 methionine biosynthetic process IEP Neighborhood
BP GO:0009616 virus induced gene silencing IEP Neighborhood
MF GO:0009975 cyclase activity IEP Neighborhood
BP GO:0010050 vegetative phase change IEP Neighborhood
MF GO:0016849 phosphorus-oxygen lyase activity IEP Neighborhood
BP GO:0035821 modification of morphology or physiology of other organism IEP Neighborhood
BP GO:0044003 modification by symbiont of host morphology or physiology IEP Neighborhood
BP GO:0044419 interspecies interaction between organisms IEP Neighborhood
BP GO:0051607 defense response to virus IEP Neighborhood
BP GO:0051701 interaction with host IEP Neighborhood
BP GO:0051817 modification of morphology or physiology of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052018 modulation by symbiont of RNA levels in host IEP Neighborhood
BP GO:0052249 modulation of RNA levels in other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0098586 cellular response to virus IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 181 229
IPR002885 Pentatricopeptide_repeat 80 107
IPR002885 Pentatricopeptide_repeat 286 314
IPR002885 Pentatricopeptide_repeat 258 285
IPR002885 Pentatricopeptide_repeat 352 383
No external refs found!