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  5. Zm00001e025110_P001

Zm00001e025110_P001


Description : transcription factor (SBP)


Gene families : OG0000102 (Archaeplastida) Phylogenetic Tree(s): OG0000102_tree ,
OG_05_0000092 (LandPlants) Phylogenetic Tree(s): OG_05_0000092_tree ,
OG_06_0000075 (SeedPlants) Phylogenetic Tree(s): OG_06_0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e025110_P001
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00198330 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.SBP... 0.02 Archaeplastida
AT1G02065 SPL8 squamosa promoter binding protein-like 8 0.05 Archaeplastida
AT1G27370 SPL10 squamosa promoter binding protein-like 10 0.03 Archaeplastida
AT1G53160 SPL4 squamosa promoter binding protein-like 4 0.07 Archaeplastida
AT3G15270 SPL5 squamosa promoter binding protein-like 5 0.1 Archaeplastida
AT3G57920 SPL15 squamosa promoter binding protein-like 15 0.05 Archaeplastida
AT3G60030 SPL12 squamosa promoter-binding protein-like 12 0.02 Archaeplastida
GSVIVT01012247001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.05 Archaeplastida
GSVIVT01018204001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
GSVIVT01020578001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.03 Archaeplastida
GSVIVT01021087001 No alias RNA biosynthesis.transcriptional activation.SBP... 0.06 Archaeplastida
Gb_03920 No alias transcription factor (SBP) 0.02 Archaeplastida
Gb_03921 No alias transcription factor (SBP) 0.04 Archaeplastida
Gb_03922 No alias transcription factor (SBP) 0.03 Archaeplastida
Gb_26599 No alias transcription factor (SBP) 0.04 Archaeplastida
Gb_32703 No alias transcription factor (SBP) 0.02 Archaeplastida
Gb_38013 No alias transcription factor (SBP) 0.03 Archaeplastida
Gb_38014 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os01g69830.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os04g46580.1 No alias transcription factor (SBP) 0.05 Archaeplastida
LOC_Os04g56170.1 No alias transcription factor (SBP) 0.06 Archaeplastida
LOC_Os06g44860.1 No alias transcription factor (SBP) 0.1 Archaeplastida
LOC_Os06g49010.4 No alias transcription factor (SBP) 0.02 Archaeplastida
LOC_Os07g32170.1 No alias transcription factor (SBP) 0.06 Archaeplastida
LOC_Os08g39890.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os09g31438.1 No alias transcription factor (SBP) 0.03 Archaeplastida
LOC_Os11g30370.1 No alias transcription factor (SBP) 0.03 Archaeplastida
MA_20537g0010 No alias transcription factor (SBP) 0.05 Archaeplastida
Pp3c16_7480V3.1 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.05 Archaeplastida
Solyc01g090730.3.1 No alias transcription factor (SBP) 0.07 Archaeplastida
Solyc02g077920.4.1 No alias transcription factor (SBP) 0.02 Archaeplastida
Solyc05g015840.3.1 No alias transcription factor (SBP) 0.03 Archaeplastida
Solyc07g062980.4.1 No alias transcription factor (SBP) 0.05 Archaeplastida
Solyc10g009080.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e006686_P001 No alias transcription factor (SBP) 0.04 Archaeplastida
Zm00001e010067_P001 No alias transcription factor (SBP) 0.05 Archaeplastida
Zm00001e013761_P001 No alias transcription factor (SBP) 0.04 Archaeplastida
Zm00001e021425_P001 No alias transcription factor (SBP) 0.05 Archaeplastida
Zm00001e025234_P001 No alias transcription factor (SBP) 0.05 Archaeplastida
Zm00001e030416_P001 No alias transcription factor (SBP) 0.04 Archaeplastida
Zm00001e034537_P001 No alias transcription factor (SBP) 0.07 Archaeplastida
Zm00001e035060_P002 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e041526_P001 No alias transcription factor (SBP) 0.03 Archaeplastida
Zm00001e041822_P001 No alias transcription factor (SBP) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR004333 SBP_dom 203 276
No external refs found!